miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26981 3' -57.2 NC_005809.1 + 36926 1.04 0.000886
Target:  5'- -cGCAAACCGCGUCCAGCCACCAGCAa -3'
miRNA:   3'- gaCGUUUGGCGCAGGUCGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 1988 0.75 0.135045
Target:  5'- gCUGUAGGCCGCGaggUCGgacuugaagugguacGCCACCAGCAc -3'
miRNA:   3'- -GACGUUUGGCGCa--GGU---------------CGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 21748 0.74 0.167117
Target:  5'- -gGCGcGGCCGCGUCCacauaggacaGGCCGcCCGGCAc -3'
miRNA:   3'- gaCGU-UUGGCGCAGG----------UCGGU-GGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 32360 0.73 0.186617
Target:  5'- gCUGCGGucGCCGCcgaggccCCGGCCGcCCAGCAg -3'
miRNA:   3'- -GACGUU--UGGCGca-----GGUCGGU-GGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 13901 0.73 0.186617
Target:  5'- -gGCGcGCCGCG-CUggcgaGGCCGCCGGCAc -3'
miRNA:   3'- gaCGUuUGGCGCaGG-----UCGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 4010 0.73 0.186617
Target:  5'- --cCAAAaCGCG-CCGGCCACCAGCGu -3'
miRNA:   3'- gacGUUUgGCGCaGGUCGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 7781 0.72 0.225576
Target:  5'- uCUGC--GCCgGCGUCCAcccuucGCCGcCCAGCAg -3'
miRNA:   3'- -GACGuuUGG-CGCAGGU------CGGU-GGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 15468 0.72 0.231674
Target:  5'- -gGCcgAAGCUGcCGUCCAguugcaucGCCACCGGCAg -3'
miRNA:   3'- gaCG--UUUGGC-GCAGGU--------CGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 27365 0.71 0.237911
Target:  5'- -cGCAGcACU-CGUCCAGCCauucgGCCAGCAa -3'
miRNA:   3'- gaCGUU-UGGcGCAGGUCGG-----UGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 1062 0.71 0.237911
Target:  5'- -cGCGAACCgGCGUCCAGUaacgCGCgCGGUAg -3'
miRNA:   3'- gaCGUUUGG-CGCAGGUCG----GUG-GUCGU- -5'
26981 3' -57.2 NC_005809.1 + 27981 0.71 0.250805
Target:  5'- aCUGCuGAAaaGCGgaUCGGCCGCCGGCAu -3'
miRNA:   3'- -GACG-UUUggCGCa-GGUCGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 24258 0.71 0.250805
Target:  5'- gCUGCGccgcuacuGCCGUGUCUAuuacaccgucGCCACCGGCc -3'
miRNA:   3'- -GACGUu-------UGGCGCAGGU----------CGGUGGUCGu -5'
26981 3' -57.2 NC_005809.1 + 27428 0.71 0.257465
Target:  5'- -gGCGcACCGCGcCCGGCgGCC-GCAg -3'
miRNA:   3'- gaCGUuUGGCGCaGGUCGgUGGuCGU- -5'
26981 3' -57.2 NC_005809.1 + 27492 0.7 0.278314
Target:  5'- -cGCGAggauGCCgGCGgccUCGGCCGCCAGCu -3'
miRNA:   3'- gaCGUU----UGG-CGCa--GGUCGGUGGUCGu -5'
26981 3' -57.2 NC_005809.1 + 14015 0.7 0.278315
Target:  5'- gUGCGcGCCGCGauggCCGGCgGCC-GCAa -3'
miRNA:   3'- gACGUuUGGCGCa---GGUCGgUGGuCGU- -5'
26981 3' -57.2 NC_005809.1 + 30116 0.7 0.285557
Target:  5'- -gGCGAugagGCCGCG-CCAgaacacGCCGCCGGCc -3'
miRNA:   3'- gaCGUU----UGGCGCaGGU------CGGUGGUCGu -5'
26981 3' -57.2 NC_005809.1 + 28554 0.7 0.285557
Target:  5'- uUGCGGccgccggccAUCGCGgcgcgcacgUCGGCCACCGGCAg -3'
miRNA:   3'- gACGUU---------UGGCGCa--------GGUCGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 13184 0.7 0.29821
Target:  5'- uCUGCuggccuACCGCGccgagUCCgagggcuggggcaaGGCCACCGGCGc -3'
miRNA:   3'- -GACGuu----UGGCGC-----AGG--------------UCGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 37373 0.7 0.308175
Target:  5'- uUGCAGGCCaGCaccaCCAG-CACCAGCAa -3'
miRNA:   3'- gACGUUUGG-CGca--GGUCgGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 26727 0.69 0.316013
Target:  5'- uUGCaAAGCCGgG-CCA-CCGCCAGCGc -3'
miRNA:   3'- gACG-UUUGGCgCaGGUcGGUGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.