Results 1 - 20 of 77 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 31699 | 0.68 | 0.375042 |
Target: 5'- gCUGCAGcACCGCcugaCCAGCCcGCCGcGCGc -3' miRNA: 3'- -GACGUU-UGGCGca--GGUCGG-UGGU-CGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 37373 | 0.7 | 0.308175 |
Target: 5'- uUGCAGGCCaGCaccaCCAG-CACCAGCAa -3' miRNA: 3'- gACGUUUGG-CGca--GGUCgGUGGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 26727 | 0.69 | 0.316013 |
Target: 5'- uUGCaAAGCCGgG-CCA-CCGCCAGCGc -3' miRNA: 3'- gACG-UUUGGCgCaGGUcGGUGGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 3879 | 0.69 | 0.324 |
Target: 5'- gCUGUAGGCCGCGcugCCGucGCCGCCGa-- -3' miRNA: 3'- -GACGUUUGGCGCa--GGU--CGGUGGUcgu -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 4429 | 0.69 | 0.331316 |
Target: 5'- -cGU--GCCGCG-CCagggggaAGCCGCCAGCGg -3' miRNA: 3'- gaCGuuUGGCGCaGG-------UCGGUGGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 870 | 0.69 | 0.332136 |
Target: 5'- aUGCGAGCCGaGUUgaaCAGCaggGCCAGCAu -3' miRNA: 3'- gACGUUUGGCgCAG---GUCGg--UGGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 4781 | 0.69 | 0.340422 |
Target: 5'- -cGCccacACUGCGcCCAGCaCGCCGGCu -3' miRNA: 3'- gaCGuu--UGGCGCaGGUCG-GUGGUCGu -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 806 | 0.68 | 0.363533 |
Target: 5'- -gGCGAcgcGCCGCGcCCAGCCcuugccgaacgucgGCCAGg- -3' miRNA: 3'- gaCGUU---UGGCGCaGGUCGG--------------UGGUCgu -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 25305 | 0.68 | 0.366167 |
Target: 5'- gUGC-GGCCG-GcCCuGCCACCGGCGc -3' miRNA: 3'- gACGuUUGGCgCaGGuCGGUGGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 30116 | 0.7 | 0.285557 |
Target: 5'- -gGCGAugagGCCGCG-CCAgaacacGCCGCCGGCc -3' miRNA: 3'- gaCGUU----UGGCGCaGGU------CGGUGGUCGu -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 28554 | 0.7 | 0.285557 |
Target: 5'- uUGCGGccgccggccAUCGCGgcgcgcacgUCGGCCACCGGCAg -3' miRNA: 3'- gACGUU---------UGGCGCa--------GGUCGGUGGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 27492 | 0.7 | 0.278314 |
Target: 5'- -cGCGAggauGCCgGCGgccUCGGCCGCCAGCu -3' miRNA: 3'- gaCGUU----UGG-CGCa--GGUCGGUGGUCGu -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 21748 | 0.74 | 0.167117 |
Target: 5'- -gGCGcGGCCGCGUCCacauaggacaGGCCGcCCGGCAc -3' miRNA: 3'- gaCGU-UUGGCGCAGG----------UCGGU-GGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 32360 | 0.73 | 0.186617 |
Target: 5'- gCUGCGGucGCCGCcgaggccCCGGCCGcCCAGCAg -3' miRNA: 3'- -GACGUU--UGGCGca-----GGUCGGU-GGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 4010 | 0.73 | 0.186617 |
Target: 5'- --cCAAAaCGCG-CCGGCCACCAGCGu -3' miRNA: 3'- gacGUUUgGCGCaGGUCGGUGGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 7781 | 0.72 | 0.225576 |
Target: 5'- uCUGC--GCCgGCGUCCAcccuucGCCGcCCAGCAg -3' miRNA: 3'- -GACGuuUGG-CGCAGGU------CGGU-GGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 15468 | 0.72 | 0.231674 |
Target: 5'- -gGCcgAAGCUGcCGUCCAguugcaucGCCACCGGCAg -3' miRNA: 3'- gaCG--UUUGGC-GCAGGU--------CGGUGGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 27365 | 0.71 | 0.237911 |
Target: 5'- -cGCAGcACU-CGUCCAGCCauucgGCCAGCAa -3' miRNA: 3'- gaCGUU-UGGcGCAGGUCGG-----UGGUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 1062 | 0.71 | 0.237911 |
Target: 5'- -cGCGAACCgGCGUCCAGUaacgCGCgCGGUAg -3' miRNA: 3'- gaCGUUUGG-CGCAGGUCG----GUG-GUCGU- -5' |
|||||||
26981 | 3' | -57.2 | NC_005809.1 | + | 27428 | 0.71 | 0.257465 |
Target: 5'- -gGCGcACCGCGcCCGGCgGCC-GCAg -3' miRNA: 3'- gaCGUuUGGCGCaGGUCGgUGGuCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home