miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26981 3' -57.2 NC_005809.1 + 181 0.68 0.375042
Target:  5'- -cGCAGaauGCCgGCGUCauccccGCCAUCAGCAu -3'
miRNA:   3'- gaCGUU---UGG-CGCAGgu----CGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 806 0.68 0.363533
Target:  5'- -gGCGAcgcGCCGCGcCCAGCCcuugccgaacgucgGCCAGg- -3'
miRNA:   3'- gaCGUU---UGGCGCaGGUCGG--------------UGGUCgu -5'
26981 3' -57.2 NC_005809.1 + 870 0.69 0.332136
Target:  5'- aUGCGAGCCGaGUUgaaCAGCaggGCCAGCAu -3'
miRNA:   3'- gACGUUUGGCgCAG---GUCGg--UGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 1062 0.71 0.237911
Target:  5'- -cGCGAACCgGCGUCCAGUaacgCGCgCGGUAg -3'
miRNA:   3'- gaCGUUUGG-CGCAGGUCG----GUG-GUCGU- -5'
26981 3' -57.2 NC_005809.1 + 1988 0.75 0.135045
Target:  5'- gCUGUAGGCCGCGaggUCGgacuugaagugguacGCCACCAGCAc -3'
miRNA:   3'- -GACGUUUGGCGCa--GGU---------------CGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 2842 0.68 0.402526
Target:  5'- -cGCGcAGCgGCG-CCAG-CACCAGCGa -3'
miRNA:   3'- gaCGU-UUGgCGCaGGUCgGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 3879 0.69 0.324
Target:  5'- gCUGUAGGCCGCGcugCCGucGCCGCCGa-- -3'
miRNA:   3'- -GACGUUUGGCGCa--GGU--CGGUGGUcgu -5'
26981 3' -57.2 NC_005809.1 + 4010 0.73 0.186617
Target:  5'- --cCAAAaCGCG-CCGGCCACCAGCGu -3'
miRNA:   3'- gacGUUUgGCGCaGGUCGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 4429 0.69 0.331316
Target:  5'- -cGU--GCCGCG-CCagggggaAGCCGCCAGCGg -3'
miRNA:   3'- gaCGuuUGGCGCaGG-------UCGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 4781 0.69 0.340422
Target:  5'- -cGCccacACUGCGcCCAGCaCGCCGGCu -3'
miRNA:   3'- gaCGuu--UGGCGCaGGUCG-GUGGUCGu -5'
26981 3' -57.2 NC_005809.1 + 6178 0.66 0.471352
Target:  5'- -cGCAGGCCG-GUCUuGCCG-CAGCGu -3'
miRNA:   3'- gaCGUUUGGCgCAGGuCGGUgGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 6614 0.67 0.461146
Target:  5'- -aGCAuGgCGUaGUCC-GCCGCCAGCu -3'
miRNA:   3'- gaCGUuUgGCG-CAGGuCGGUGGUCGu -5'
26981 3' -57.2 NC_005809.1 + 7385 0.67 0.421544
Target:  5'- -gGCGGgcACCGCGgcgaCCuuCCACCAGCu -3'
miRNA:   3'- gaCGUU--UGGCGCa---GGucGGUGGUCGu -5'
26981 3' -57.2 NC_005809.1 + 7781 0.72 0.225576
Target:  5'- uCUGC--GCCgGCGUCCAcccuucGCCGcCCAGCAg -3'
miRNA:   3'- -GACGuuUGG-CGCAGGU------CGGU-GGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9004 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9100 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9148 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9196 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9244 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9292 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.