Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26982 | 5' | -57.1 | NC_005809.1 | + | 7069 | 0.66 | 0.573348 |
Target: 5'- -aGGUacuucaUGAcGCCGcgGCCUacccacggcgCGCCCACGCg -3' miRNA: 3'- uaCCA------GCUaUGGC--UGGA----------GCGGGUGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 29286 | 0.66 | 0.573348 |
Target: 5'- cGUGGUaggcgaCGAacUGCUGGcCCUUGCCCA-GCa -3' miRNA: 3'- -UACCA------GCU--AUGGCU-GGAGCGGGUgCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 15032 | 0.66 | 0.573348 |
Target: 5'- -cGcGUUGGUGuuGGCgaUGCCCGCGUu -3' miRNA: 3'- uaC-CAGCUAUggCUGgaGCGGGUGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 688 | 0.66 | 0.573348 |
Target: 5'- -cGG-CGGcGCCGGCCgggcCGCCCAagauacCGCc -3' miRNA: 3'- uaCCaGCUaUGGCUGGa---GCGGGU------GCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 42016 | 0.66 | 0.573348 |
Target: 5'- cAUGGUCGAgGCgUGGuuUUucagcgGCCCGCGCa -3' miRNA: 3'- -UACCAGCUaUG-GCUggAG------CGGGUGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 32364 | 0.66 | 0.573348 |
Target: 5'- -cGGUCGccGCCGAggccCCggcCGCCCA-GCa -3' miRNA: 3'- uaCCAGCuaUGGCU----GGa--GCGGGUgCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 27174 | 0.66 | 0.573348 |
Target: 5'- -cGGUCGu--CCGGCaucuUCGCCggcccgCACGCg -3' miRNA: 3'- uaCCAGCuauGGCUGg---AGCGG------GUGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 14922 | 0.66 | 0.571166 |
Target: 5'- cUGGcCGGccucaagUGCCGACUgcgCGCCCAacucggcgaugcuCGCg -3' miRNA: 3'- uACCaGCU-------AUGGCUGGa--GCGGGU-------------GCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 8509 | 0.66 | 0.530167 |
Target: 5'- --cGUCGAUGCCcuuGAUgUCGCCgGCGa -3' miRNA: 3'- uacCAGCUAUGG---CUGgAGCGGgUGCg -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 17611 | 0.66 | 0.530167 |
Target: 5'- -cGcGUCGAguaCGACUUCGaCCC-CGCg -3' miRNA: 3'- uaC-CAGCUaugGCUGGAGC-GGGuGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 12776 | 0.66 | 0.523787 |
Target: 5'- -cGGcaUCGAgcgcgagacagcguaUGCCGAaaUCUCGCgCACGCg -3' miRNA: 3'- uaCC--AGCU---------------AUGGCU--GGAGCGgGUGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 10512 | 0.66 | 0.51955 |
Target: 5'- uUGaUCGAacUGCUGACCgcCGgCCACGCu -3' miRNA: 3'- uACcAGCU--AUGGCUGGa-GCgGGUGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 36170 | 0.66 | 0.51955 |
Target: 5'- cAUGGgccgCGAcuacaccggGCCGGCCg-GCCUGCGCc -3' miRNA: 3'- -UACCa---GCUa--------UGGCUGGagCGGGUGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 33786 | 0.66 | 0.51955 |
Target: 5'- -cGG-CGcgGCCGACCcaucgUGCgCCGCGUg -3' miRNA: 3'- uaCCaGCuaUGGCUGGa----GCG-GGUGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 20627 | 0.67 | 0.509017 |
Target: 5'- -aGGUCGGUGUCGGCCUgCGCUCGu-- -3' miRNA: 3'- uaCCAGCUAUGGCUGGA-GCGGGUgcg -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 7626 | 0.67 | 0.509017 |
Target: 5'- gAUGGUCaGGggGCgCGG-CUCGaCCCACGCc -3' miRNA: 3'- -UACCAG-CUa-UG-GCUgGAGC-GGGUGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 616 | 0.67 | 0.509017 |
Target: 5'- -cGG-CGAUGauGGCCUCaGCCUcgGCGCg -3' miRNA: 3'- uaCCaGCUAUggCUGGAG-CGGG--UGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 6266 | 0.67 | 0.502741 |
Target: 5'- -cGGUUGAUcugcgcgcugggcagGCCGAacaggUCGCCCACGa -3' miRNA: 3'- uaCCAGCUA---------------UGGCUgg---AGCGGGUGCg -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 8639 | 0.67 | 0.498576 |
Target: 5'- gGUGG-CGAggucGCCGGCCUUcaUCGCGCg -3' miRNA: 3'- -UACCaGCUa---UGGCUGGAGcgGGUGCG- -5' |
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26982 | 5' | -57.1 | NC_005809.1 | + | 37000 | 0.67 | 0.498576 |
Target: 5'- cGUGGaguAUGCCGGCCUCGacaucgaagCCAUGCg -3' miRNA: 3'- -UACCagcUAUGGCUGGAGCg--------GGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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