Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 9314 | 0.66 | 0.404864 |
Target: 5'- gCGACCUGgCGG-CGcACgucgGCGCGGc -3' miRNA: 3'- gGCUGGACgGCCgGCuUGa---CGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 13119 | 0.66 | 0.404864 |
Target: 5'- uCCGGgUUGCCGGCCag---GCGUGGGu -3' miRNA: 3'- -GGCUgGACGGCCGGcuugaCGCGCUU- -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 6616 | 0.66 | 0.404864 |
Target: 5'- aUGACCaGCgGGCgCGuggcGCUGCGCGc- -3' miRNA: 3'- gGCUGGaCGgCCG-GCu---UGACGCGCuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 19233 | 0.66 | 0.404864 |
Target: 5'- gCGGCgagGCC-GUCGAAUUGCGCGGc -3' miRNA: 3'- gGCUGga-CGGcCGGCUUGACGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 11837 | 0.66 | 0.395808 |
Target: 5'- aCCGGCCgcGCCgcGGuuGGcCUGgGCGAAc -3' miRNA: 3'- -GGCUGGa-CGG--CCggCUuGACgCGCUU- -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 19012 | 0.66 | 0.395808 |
Target: 5'- cCCGcACCUGCCGGC-GAugUcgGC-CGAGg -3' miRNA: 3'- -GGC-UGGACGGCCGgCUugA--CGcGCUU- -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 33780 | 0.66 | 0.395808 |
Target: 5'- aCUGACCgGCgCGGCCGAcccAUcgUGCGCc-- -3' miRNA: 3'- -GGCUGGaCG-GCCGGCU---UG--ACGCGcuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 18628 | 0.66 | 0.395808 |
Target: 5'- gCCGACCUcGCCGGgCG---UGCGCc-- -3' miRNA: 3'- -GGCUGGA-CGGCCgGCuugACGCGcuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 31433 | 0.66 | 0.386884 |
Target: 5'- gCGGCCcaGCagcaGGCCGAACUGCucGCa-- -3' miRNA: 3'- gGCUGGa-CGg---CCGGCUUGACG--CGcuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 33164 | 0.66 | 0.378093 |
Target: 5'- -aGACCUGCaaGCCcgcGGcCUGCGCGAc -3' miRNA: 3'- ggCUGGACGgcCGG---CUuGACGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 21963 | 0.66 | 0.378093 |
Target: 5'- aCCGACCUGCgacGCCGc-CUG-GCGAAg -3' miRNA: 3'- -GGCUGGACGgc-CGGCuuGACgCGCUU- -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 14685 | 0.66 | 0.361764 |
Target: 5'- gCGACgUGCUGGgCGAGCacgccaagauggcgaGCGCGGAc -3' miRNA: 3'- gGCUGgACGGCCgGCUUGa--------------CGCGCUU- -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 9200 | 0.66 | 0.360919 |
Target: 5'- uUGGCCUGCuCGGCgGcGCgGCGCa-- -3' miRNA: 3'- gGCUGGACG-GCCGgCuUGaCGCGcuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 15141 | 0.66 | 0.360919 |
Target: 5'- -gGGCCUG-CGGCCGccggGCGCGGu -3' miRNA: 3'- ggCUGGACgGCCGGCuugaCGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 32920 | 0.66 | 0.360919 |
Target: 5'- aCGGCCUGCaCGGCU--GCUGUucggccaggGCGAc -3' miRNA: 3'- gGCUGGACG-GCCGGcuUGACG---------CGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 41739 | 0.67 | 0.352538 |
Target: 5'- aCCaACCUGCCcaccuGGCCGAcguucggcaaggGCUggGCGCGGc -3' miRNA: 3'- -GGcUGGACGG-----CCGGCU------------UGA--CGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 39892 | 0.67 | 0.352538 |
Target: 5'- aCGAcaaCCUGCCguGGCUGAucgaacACUGgGCGAc -3' miRNA: 3'- gGCU---GGACGG--CCGGCU------UGACgCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 378 | 0.67 | 0.352538 |
Target: 5'- uUGGCCUGCCgauugagcgcGGCC-AGC-GCGCGAc -3' miRNA: 3'- gGCUGGACGG----------CCGGcUUGaCGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 16313 | 0.67 | 0.330604 |
Target: 5'- gCCGACCagGCCGGCgggugcccgugccuuCGGcgacgcgcgcaaaACUGCGCGc- -3' miRNA: 3'- -GGCUGGa-CGGCCG---------------GCU-------------UGACGCGCuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 7203 | 0.67 | 0.32823 |
Target: 5'- -gGGCUUGCCa-UCGGACUGCGUGAu -3' miRNA: 3'- ggCUGGACGGccGGCUUGACGCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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