miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26983 3' -60.2 NC_005809.1 + 42221 0.71 0.187591
Target:  5'- uCgGGCCUGgCGGaCGGccuGCUGCGCGAc -3'
miRNA:   3'- -GgCUGGACgGCCgGCU---UGACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 41966 0.67 0.320407
Target:  5'- aCGGCgCUGCUGGCCGAcCcGCagGCGGc -3'
miRNA:   3'- gGCUG-GACGGCCGGCUuGaCG--CGCUu -5'
26983 3' -60.2 NC_005809.1 + 41739 0.67 0.352538
Target:  5'- aCCaACCUGCCcaccuGGCCGAcguucggcaaggGCUggGCGCGGc -3'
miRNA:   3'- -GGcUGGACGG-----CCGGCU------------UGA--CGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 41261 0.7 0.20848
Target:  5'- gUCGGCCUGgUGGCCGucGCccuggGCGCGGc -3'
miRNA:   3'- -GGCUGGACgGCCGGCu-UGa----CGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 41104 0.72 0.151288
Target:  5'- cCCGGCCUGCCaggaGGCCGccGACcGCGCc-- -3'
miRNA:   3'- -GGCUGGACGG----CCGGC--UUGaCGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 39892 0.67 0.352538
Target:  5'- aCGAcaaCCUGCCguGGCUGAucgaacACUGgGCGAc -3'
miRNA:   3'- gGCU---GGACGG--CCGGCU------UGACgCGCUu -5'
26983 3' -60.2 NC_005809.1 + 39024 0.72 0.159717
Target:  5'- gCGGCgCgGuuGGCgGGACUGCGCGGu -3'
miRNA:   3'- gGCUG-GaCggCCGgCUUGACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 37791 0.67 0.320407
Target:  5'- gCCGGCgUGCUGGgCGcaGugUGgGCGAAc -3'
miRNA:   3'- -GGCUGgACGGCCgGC--UugACgCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 37583 0.68 0.2834
Target:  5'- gCCGACCUGCUGuucGCCaacgucaugGAACUgaccagcaGCGCGAu -3'
miRNA:   3'- -GGCUGGACGGC---CGG---------CUUGA--------CGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 37331 1.07 0.000332
Target:  5'- cCCGACCUGCCGGCCGAACUGCGCGAAc -3'
miRNA:   3'- -GGCUGGACGGCCGGCUUGACGCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 36837 0.67 0.32823
Target:  5'- cCCGGCgC-GCUGGgCGAuCUGUGCGAc -3'
miRNA:   3'- -GGCUG-GaCGGCCgGCUuGACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 36225 0.68 0.2834
Target:  5'- cCCGGCCUuCgGGCCGGGCgcuuuggcugGgGCGGAa -3'
miRNA:   3'- -GGCUGGAcGgCCGGCUUGa---------CgCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 36178 0.71 0.168566
Target:  5'- gCGACUacaccggGCCGGCCGGcCUGCGCc-- -3'
miRNA:   3'- gGCUGGa------CGGCCGGCUuGACGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 36097 0.67 0.320408
Target:  5'- gCgGGCCUGCgCGGCgugcaGuucCUGCGCGAc -3'
miRNA:   3'- -GgCUGGACG-GCCGg----Cuu-GACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 35924 0.67 0.312725
Target:  5'- -aGACCUGagcgcggacacuCCGGCCaAGC-GCGCGAAg -3'
miRNA:   3'- ggCUGGAC------------GGCCGGcUUGaCGCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 34702 0.68 0.305184
Target:  5'- cCCGACCa-UCGGCCGAAgcCUGaacCGCGAAg -3'
miRNA:   3'- -GGCUGGacGGCCGGCUU--GAC---GCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 34625 0.71 0.177853
Target:  5'- gCCGACCUGaaauaUGGCCGug--GCGUGAAg -3'
miRNA:   3'- -GGCUGGACg----GCCGGCuugaCGCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 33945 0.67 0.32823
Target:  5'- gCGACCUcGCCaccgcagcGGCCGAGaaGCGCa-- -3'
miRNA:   3'- gGCUGGA-CGG--------CCGGCUUgaCGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 33877 0.67 0.320407
Target:  5'- uCCGACCcgGCCaguacaccaacGCCGAGgUGCGCGc- -3'
miRNA:   3'- -GGCUGGa-CGGc----------CGGCUUgACGCGCuu -5'
26983 3' -60.2 NC_005809.1 + 33780 0.66 0.395808
Target:  5'- aCUGACCgGCgCGGCCGAcccAUcgUGCGCc-- -3'
miRNA:   3'- -GGCUGGaCG-GCCGGCU---UG--ACGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.