Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26986 | 5' | -56.9 | NC_005809.1 | + | 7545 | 0.66 | 0.547596 |
Target: 5'- -gGCGgcGUGCUCGaucugcGGCGCCaccGGCu -3' miRNA: 3'- gaCGCuaCGCGAGU------UCGCGGacaCCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 39307 | 0.66 | 0.547596 |
Target: 5'- -gGCGuUGCGCgggaaauguuccUgAAGUGCCUGcucgGGCa -3' miRNA: 3'- gaCGCuACGCG------------AgUUCGCGGACa---CCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 18375 | 0.66 | 0.547596 |
Target: 5'- -gGCGAgguugGC-CUUGccgauGGCGCCgGUGGCg -3' miRNA: 3'- gaCGCUa----CGcGAGU-----UCGCGGaCACCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 22858 | 0.66 | 0.536711 |
Target: 5'- -gGCGAUGCGC---GGCGCCUcuauGCa -3' miRNA: 3'- gaCGCUACGCGaguUCGCGGAcac-CG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 4580 | 0.66 | 0.536711 |
Target: 5'- gCUGCucGGUGCGC-CAGGCGaggaaCUGcucGGCc -3' miRNA: 3'- -GACG--CUACGCGaGUUCGCg----GACa--CCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 25193 | 0.66 | 0.536711 |
Target: 5'- gUGCGucgGCGCgaugCAGGCauaCCUGUcgcaGGCg -3' miRNA: 3'- gACGCua-CGCGa---GUUCGc--GGACA----CCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 29826 | 0.66 | 0.525901 |
Target: 5'- -aGC---GCGC-CAAGCGUCUG-GGCg -3' miRNA: 3'- gaCGcuaCGCGaGUUCGCGGACaCCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 39505 | 0.66 | 0.515175 |
Target: 5'- aUG-GGUGCgGCUCGGGCGCUUGacGUg -3' miRNA: 3'- gACgCUACG-CGAGUUCGCGGACacCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 39849 | 0.66 | 0.515175 |
Target: 5'- -cGgGccGCGCUCAAGCGUCc--GGCc -3' miRNA: 3'- gaCgCuaCGCGAGUUCGCGGacaCCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 41756 | 0.67 | 0.463008 |
Target: 5'- uCUGCGc-GCGCUCAAGCccagccaCCUGcugacGGCg -3' miRNA: 3'- -GACGCuaCGCGAGUUCGc------GGACa----CCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 250 | 0.67 | 0.452905 |
Target: 5'- -gGCGGUaGCGaaucccCAGGCGCUUGaGGCa -3' miRNA: 3'- gaCGCUA-CGCga----GUUCGCGGACaCCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 26168 | 0.67 | 0.452905 |
Target: 5'- uCUGCGAUGCGgUCGcAGauuUCgGUGGCg -3' miRNA: 3'- -GACGCUACGCgAGU-UCgc-GGaCACCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 19477 | 0.67 | 0.442924 |
Target: 5'- -aGCu-UGCGC-CAGGUGCCgGUGGg -3' miRNA: 3'- gaCGcuACGCGaGUUCGCGGaCACCg -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 7228 | 0.68 | 0.433068 |
Target: 5'- uCUGCGccGCGCUCAcccucGGCGa-UGUcGGCc -3' miRNA: 3'- -GACGCuaCGCGAGU-----UCGCggACA-CCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 15112 | 0.68 | 0.433068 |
Target: 5'- gUGCGcgGCGCgcuggCAuaccAGCGCCaG-GGCc -3' miRNA: 3'- gACGCuaCGCGa----GU----UCGCGGaCaCCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 4376 | 0.68 | 0.433068 |
Target: 5'- -gGCgGAUGCGCagcCAGGCGCCgucgcgccgGGCc -3' miRNA: 3'- gaCG-CUACGCGa--GUUCGCGGaca------CCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 35780 | 0.68 | 0.413746 |
Target: 5'- -aGCGAUGCGCaagUCAAgGCGCUgaaccaGGCc -3' miRNA: 3'- gaCGCUACGCG---AGUU-CGCGGaca---CCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 13928 | 0.68 | 0.413746 |
Target: 5'- -gGCGAUGuCGCgc-AGCGCC-GUGGa -3' miRNA: 3'- gaCGCUAC-GCGaguUCGCGGaCACCg -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 5033 | 0.68 | 0.404286 |
Target: 5'- -cGCGAUGCcccGCUCGauGGCGuCCUGcuUGaGCa -3' miRNA: 3'- gaCGCUACG---CGAGU--UCGC-GGAC--AC-CG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 28760 | 0.68 | 0.394963 |
Target: 5'- -cGCGGUGCGCUUcucGGCGCgcacGGCg -3' miRNA: 3'- gaCGCUACGCGAGu--UCGCGgacaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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