miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26987 3' -56.3 NC_005809.1 + 31359 0.7 0.328708
Target:  5'- uACCUGgaagaaGACgGCCGgaaGCuGCUCAAGGCg -3'
miRNA:   3'- -UGGAUg-----CUGaCGGCg--UG-CGAGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 35730 0.7 0.345267
Target:  5'- gGCCUACGAaaagGCCGU-CGC-CGAGGg -3'
miRNA:   3'- -UGGAUGCUga--CGGCGuGCGaGUUCCg -5'
26987 3' -56.3 NC_005809.1 + 21966 0.7 0.353768
Target:  5'- gACCUGCGAC-GCCGcCugGCg-AAGGa -3'
miRNA:   3'- -UGGAUGCUGaCGGC-GugCGagUUCCg -5'
26987 3' -56.3 NC_005809.1 + 26338 0.7 0.353769
Target:  5'- cACC-GCGAacugGCCGCGcCGCUCGuaucGGCa -3'
miRNA:   3'- -UGGaUGCUga--CGGCGU-GCGAGUu---CCG- -5'
26987 3' -56.3 NC_005809.1 + 19153 0.69 0.37121
Target:  5'- gGCCgGCGucgcACUGaCCgGCGCGCUCAucaAGGUa -3'
miRNA:   3'- -UGGaUGC----UGAC-GG-CGUGCGAGU---UCCG- -5'
26987 3' -56.3 NC_005809.1 + 13884 0.69 0.380148
Target:  5'- gACCUugugaACGACgugGCgCGcCGCGCUggCGAGGCc -3'
miRNA:   3'- -UGGA-----UGCUGa--CG-GC-GUGCGA--GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 40601 0.69 0.38105
Target:  5'- cGCCUACaGCgugccuucccccaggGCCGCGCGCUCGAc-- -3'
miRNA:   3'- -UGGAUGcUGa--------------CGGCGUGCGAGUUccg -5'
26987 3' -56.3 NC_005809.1 + 18383 0.69 0.383764
Target:  5'- cGCCUACGuGCUcgcgcucauggacacGCCgaaGCGCGCagccgUCGAGGCg -3'
miRNA:   3'- -UGGAUGC-UGA---------------CGG---CGUGCG-----AGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 7155 0.69 0.38923
Target:  5'- gGCCUggAUGACcaggGCCGgGCGCUUgucggauucgGGGGCg -3'
miRNA:   3'- -UGGA--UGCUGa---CGGCgUGCGAG----------UUCCG- -5'
26987 3' -56.3 NC_005809.1 + 35506 0.69 0.398451
Target:  5'- aGCCUguucaaACGAC-GCUGC-CGCcCGAGGCc -3'
miRNA:   3'- -UGGA------UGCUGaCGGCGuGCGaGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 26301 0.69 0.407812
Target:  5'- aGCCUucCGGgUgGCCGCGCGC--GAGGCc -3'
miRNA:   3'- -UGGAu-GCUgA-CGGCGUGCGagUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 4936 0.69 0.407812
Target:  5'- uGCCcGCGACgGuCUGCACGUcugCGAGGUu -3'
miRNA:   3'- -UGGaUGCUGaC-GGCGUGCGa--GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 5286 0.69 0.407812
Target:  5'- aGCgU-CGAUUGCUGCAUGUcuggcaggUCGAGGCc -3'
miRNA:   3'- -UGgAuGCUGACGGCGUGCG--------AGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 23504 0.69 0.41731
Target:  5'- gACCUGCGGCaguuccGCgaGCGCGCcuUCcAGGCg -3'
miRNA:   3'- -UGGAUGCUGa-----CGg-CGUGCG--AGuUCCG- -5'
26987 3' -56.3 NC_005809.1 + 24171 0.69 0.41731
Target:  5'- cACCUucgcCGACgugGCCGCcaccgGCGCcaucggCAAGGCc -3'
miRNA:   3'- -UGGAu---GCUGa--CGGCG-----UGCGa-----GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 36818 0.68 0.436702
Target:  5'- gGCCcugGCGcacucGCUGCCcgGCGCGCU--GGGCg -3'
miRNA:   3'- -UGGa--UGC-----UGACGG--CGUGCGAguUCCG- -5'
26987 3' -56.3 NC_005809.1 + 8406 0.68 0.436702
Target:  5'- aGCCaguCGGCcaggGCCGUGCGCUUgucuacggccuuGAGGCu -3'
miRNA:   3'- -UGGau-GCUGa---CGGCGUGCGAG------------UUCCG- -5'
26987 3' -56.3 NC_005809.1 + 29759 0.68 0.446591
Target:  5'- gGCCU-CGGCUGCUGCcagGCGCgugcgCGAgauuucGGCa -3'
miRNA:   3'- -UGGAuGCUGACGGCG---UGCGa----GUU------CCG- -5'
26987 3' -56.3 NC_005809.1 + 27688 0.68 0.446591
Target:  5'- gUCUugGAauacagGCCGCGCGCcggCAGcGGCu -3'
miRNA:   3'- uGGAugCUga----CGGCGUGCGa--GUU-CCG- -5'
26987 3' -56.3 NC_005809.1 + 11331 0.68 0.446591
Target:  5'- cGCC--CGGCUcguagcuggGCCGCGCGC-CGGGGUu -3'
miRNA:   3'- -UGGauGCUGA---------CGGCGUGCGaGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.