Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 33891 | 0.66 | 0.551864 |
Target: 5'- --cGGCG-CACACCuGGGcggcgcAGCAGCCGc -3' miRNA: 3'- ucaCCGUgGUGUGGuUCU------UCGUCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 33195 | 0.66 | 0.58333 |
Target: 5'- cAGUGGCugCACAaugcac-GCGGCCGc -3' miRNA: 3'- -UCACCGugGUGUgguucuuCGUCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 8696 | 0.66 | 0.574296 |
Target: 5'- aGGUGuGCGCCGCGC--AGAuuGCuGCCGa -3' miRNA: 3'- -UCAC-CGUGGUGUGguUCUu-CGuCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 42328 | 0.66 | 0.574296 |
Target: 5'- --cGGCACCAC-CgGGGAaacccAGCGcGCCAa -3' miRNA: 3'- ucaCCGUGGUGuGgUUCU-----UCGU-CGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 38430 | 0.66 | 0.551864 |
Target: 5'- aGGUGGgcggcuucCACUauGCGCCGGGAAGCAacGCUg -3' miRNA: 3'- -UCACC--------GUGG--UGUGGUUCUUCGU--CGGu -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 37838 | 0.66 | 0.551864 |
Target: 5'- nGUGGCcgagaacaucGCgGuCAUCAucGAAGCAGCCAa -3' miRNA: 3'- uCACCG----------UGgU-GUGGUu-CUUCGUCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 32421 | 0.66 | 0.548521 |
Target: 5'- -cUGGCugCugACCGccuuccagaagaaaGGAGGCguGGCCGg -3' miRNA: 3'- ucACCGugGugUGGU--------------UCUUCG--UCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 6369 | 0.66 | 0.596932 |
Target: 5'- cGG-GGCGCUggguuACACCAGGucGGCcGCCGc -3' miRNA: 3'- -UCaCCGUGG-----UGUGGUUCu-UCGuCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 11389 | 0.66 | 0.551864 |
Target: 5'- cGGUGGCgACCugAugggCCAGGGucuugAGCAGCg- -3' miRNA: 3'- -UCACCG-UGGugU----GGUUCU-----UCGUCGgu -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 8278 | 0.66 | 0.584462 |
Target: 5'- --cGGCuuccaggGCCACgcuGCCGGGGcaguGCAGCCAg -3' miRNA: 3'- ucaCCG-------UGGUG---UGGUUCUu---CGUCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 36417 | 0.66 | 0.596932 |
Target: 5'- gGGUGcccGUGCCuCACCccugGGGAAGUAGCCu -3' miRNA: 3'- -UCAC---CGUGGuGUGG----UUCUUCGUCGGu -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 39528 | 0.66 | 0.56305 |
Target: 5'- cGU-GCugCugACCAGGAuggAGCAGCa- -3' miRNA: 3'- uCAcCGugGugUGGUUCU---UCGUCGgu -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 40979 | 0.66 | 0.56305 |
Target: 5'- ---cGCACUcgacCACCAGGAaggcGGCGGCCAc -3' miRNA: 3'- ucacCGUGGu---GUGGUUCU----UCGUCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 16936 | 0.66 | 0.56305 |
Target: 5'- uAG-GGCACgGCGCCGuccAGCAGCg- -3' miRNA: 3'- -UCaCCGUGgUGUGGUucuUCGUCGgu -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 27580 | 0.66 | 0.585593 |
Target: 5'- aAG-GGCACCgGCAgCAGGcGGC-GCCAg -3' miRNA: 3'- -UCaCCGUGG-UGUgGUUCuUCGuCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 4822 | 0.66 | 0.595797 |
Target: 5'- aGGUcGGgGCCgGCGCCGucgucgaauucacGGAAaGCGGCCAg -3' miRNA: 3'- -UCA-CCgUGG-UGUGGU-------------UCUU-CGUCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 14004 | 0.66 | 0.56305 |
Target: 5'- cGGUGGCcgACgugCGCGCCGcGAuggccGGCGGCCGc -3' miRNA: 3'- -UCACCG--UG---GUGUGGUuCU-----UCGUCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 41967 | 0.66 | 0.56305 |
Target: 5'- --cGGCGCUGCugGCCGAcccgcAGGCGGCCAu -3' miRNA: 3'- ucaCCGUGGUG--UGGUUc----UUCGUCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 38387 | 0.67 | 0.486444 |
Target: 5'- --cGGCcaacauGCC-CGCCAucGAGGCGGCCGg -3' miRNA: 3'- ucaCCG------UGGuGUGGUu-CUUCGUCGGU- -5' |
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26990 | 3' | -55.5 | NC_005809.1 | + | 12811 | 0.67 | 0.507879 |
Target: 5'- ---cGCGCaCGCGCCuGGcAGCAGCCGa -3' miRNA: 3'- ucacCGUG-GUGUGGuUCuUCGUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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