miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26990 3' -55.5 NC_005809.1 + 11389 0.66 0.551864
Target:  5'- cGGUGGCgACCugAugggCCAGGGucuugAGCAGCg- -3'
miRNA:   3'- -UCACCG-UGGugU----GGUUCU-----UCGUCGgu -5'
26990 3' -55.5 NC_005809.1 + 2222 0.68 0.455126
Target:  5'- gGGUaGCACCACGCgCAGcAGGCGGCg- -3'
miRNA:   3'- -UCAcCGUGGUGUG-GUUcUUCGUCGgu -5'
26990 3' -55.5 NC_005809.1 + 37642 0.68 0.465446
Target:  5'- cGUGGCGCC-CGagggCAAGAAGCuGGUCGu -3'
miRNA:   3'- uCACCGUGGuGUg---GUUCUUCG-UCGGU- -5'
26990 3' -55.5 NC_005809.1 + 38387 0.67 0.486444
Target:  5'- --cGGCcaacauGCC-CGCCAucGAGGCGGCCGg -3'
miRNA:   3'- ucaCCG------UGGuGUGGUu-CUUCGUCGGU- -5'
26990 3' -55.5 NC_005809.1 + 27428 0.67 0.507879
Target:  5'- --gGcGCACCGCGCCc---GGCGGCCGc -3'
miRNA:   3'- ucaC-CGUGGUGUGGuucuUCGUCGGU- -5'
26990 3' -55.5 NC_005809.1 + 10307 0.67 0.529704
Target:  5'- cGG-GGUGCCACuucgccaguuucGCCAGGccGUAGCCGu -3'
miRNA:   3'- -UCaCCGUGGUG------------UGGUUCuuCGUCGGU- -5'
26990 3' -55.5 NC_005809.1 + 24485 0.67 0.529704
Target:  5'- -uUGGC-CUGCGCCAGGAAGUcguaggGGCUg -3'
miRNA:   3'- ucACCGuGGUGUGGUUCUUCG------UCGGu -5'
26990 3' -55.5 NC_005809.1 + 32418 0.67 0.529704
Target:  5'- --cGcGCGCCACgucuGCCAAGAcgacGGCAGCg- -3'
miRNA:   3'- ucaC-CGUGGUG----UGGUUCU----UCGUCGgu -5'
26990 3' -55.5 NC_005809.1 + 34653 0.67 0.540746
Target:  5'- aGGUGGaCGCCGaGCgCAAcGAGCAGCUg -3'
miRNA:   3'- -UCACC-GUGGUgUG-GUUcUUCGUCGGu -5'
26990 3' -55.5 NC_005809.1 + 9447 0.68 0.434864
Target:  5'- uGGUcGCGuCCACGCCGAGGgccugauaGGCAGCgAa -3'
miRNA:   3'- -UCAcCGU-GGUGUGGUUCU--------UCGUCGgU- -5'
26990 3' -55.5 NC_005809.1 + 38078 0.69 0.415134
Target:  5'- uGUGGCGCCGCGCgCAuccGGCGGUUu -3'
miRNA:   3'- uCACCGUGGUGUG-GUucuUCGUCGGu -5'
26990 3' -55.5 NC_005809.1 + 24277 0.69 0.415134
Target:  5'- cGUGGCGCCGgacagugacCACguGGggGCGGUgAg -3'
miRNA:   3'- uCACCGUGGU---------GUGguUCuuCGUCGgU- -5'
26990 3' -55.5 NC_005809.1 + 17440 0.72 0.243978
Target:  5'- cAGUGGCcccGCCAgCAUCGAGGccAGguGCCAc -3'
miRNA:   3'- -UCACCG---UGGU-GUGGUUCU--UCguCGGU- -5'
26990 3' -55.5 NC_005809.1 + 35024 0.71 0.293537
Target:  5'- cGGUGGCGCCGCAgaUCGAGcacGCcGCCGa -3'
miRNA:   3'- -UCACCGUGGUGU--GGUUCuu-CGuCGGU- -5'
26990 3' -55.5 NC_005809.1 + 27485 0.71 0.301226
Target:  5'- ---cGCACCACGCgAGGAugccGGCGGCCu -3'
miRNA:   3'- ucacCGUGGUGUGgUUCU----UCGUCGGu -5'
26990 3' -55.5 NC_005809.1 + 4429 0.7 0.350608
Target:  5'- ---cGUGCCGCGCCAgggGGAAGCcGCCAg -3'
miRNA:   3'- ucacCGUGGUGUGGU---UCUUCGuCGGU- -5'
26990 3' -55.5 NC_005809.1 + 30173 0.7 0.368299
Target:  5'- cAGuUGGCGCCagucggugaAgGCCAuGAAGUAGCCGc -3'
miRNA:   3'- -UC-ACCGUGG---------UgUGGUuCUUCGUCGGU- -5'
26990 3' -55.5 NC_005809.1 + 29461 0.69 0.377372
Target:  5'- -cUGGCACCAgGCgAcGAAGCgcgcGGCCAg -3'
miRNA:   3'- ucACCGUGGUgUGgUuCUUCG----UCGGU- -5'
26990 3' -55.5 NC_005809.1 + 6898 0.69 0.395963
Target:  5'- -cUGGCAUCGCAUCAucaGGAAauaggcauuGCGGCCGa -3'
miRNA:   3'- ucACCGUGGUGUGGU---UCUU---------CGUCGGU- -5'
26990 3' -55.5 NC_005809.1 + 9253 0.69 0.415134
Target:  5'- cAGUu-CACCAUACCGcaGGAAGCGGUCGg -3'
miRNA:   3'- -UCAccGUGGUGUGGU--UCUUCGUCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.