miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26990 3' -55.5 NC_005809.1 + 39087 1.08 0.000584
Target:  5'- aAGUGGCACCACACCAAGAAGCAGCCAu -3'
miRNA:   3'- -UCACCGUGGUGUGGUUCUUCGUCGGU- -5'
26990 3' -55.5 NC_005809.1 + 32696 0.78 0.104457
Target:  5'- ---cGCGCCugGCCGAGAAGCAGCg- -3'
miRNA:   3'- ucacCGUGGugUGGUUCUUCGUCGgu -5'
26990 3' -55.5 NC_005809.1 + 25123 0.75 0.170472
Target:  5'- cGUGGCACCugGCCucGAugcuGGCggGGCCAc -3'
miRNA:   3'- uCACCGUGGugUGGuuCU----UCG--UCGGU- -5'
26990 3' -55.5 NC_005809.1 + 18311 0.74 0.190694
Target:  5'- --cGGCGCCACGCuCAAGGuGGCaAGCCGc -3'
miRNA:   3'- ucaCCGUGGUGUG-GUUCU-UCG-UCGGU- -5'
26990 3' -55.5 NC_005809.1 + 13898 0.73 0.224961
Target:  5'- cGUGGCgcGCCGCGCUGGcGAGGCcGCCGg -3'
miRNA:   3'- uCACCG--UGGUGUGGUU-CUUCGuCGGU- -5'
26990 3' -55.5 NC_005809.1 + 17440 0.72 0.243978
Target:  5'- cAGUGGCcccGCCAgCAUCGAGGccAGguGCCAc -3'
miRNA:   3'- -UCACCG---UGGU-GUGGUUCU--UCguCGGU- -5'
26990 3' -55.5 NC_005809.1 + 15124 0.72 0.264313
Target:  5'- -cUGGCAUaccaGCGCCAGGGccuGCGGCCGc -3'
miRNA:   3'- ucACCGUGg---UGUGGUUCUu--CGUCGGU- -5'
26990 3' -55.5 NC_005809.1 + 12703 0.72 0.27789
Target:  5'- gGGUGGUGCUAgACCcguucgcAGGAAGCGGCaCAa -3'
miRNA:   3'- -UCACCGUGGUgUGG-------UUCUUCGUCG-GU- -5'
26990 3' -55.5 NC_005809.1 + 14919 0.71 0.293537
Target:  5'- aGGUGGCGCC-CACCuGGGuAGCuuucauGCCGa -3'
miRNA:   3'- -UCACCGUGGuGUGGuUCU-UCGu-----CGGU- -5'
26990 3' -55.5 NC_005809.1 + 35024 0.71 0.293537
Target:  5'- cGGUGGCGCCGCAgaUCGAGcacGCcGCCGa -3'
miRNA:   3'- -UCACCGUGGUGU--GGUUCuu-CGuCGGU- -5'
26990 3' -55.5 NC_005809.1 + 27485 0.71 0.301226
Target:  5'- ---cGCACCACGCgAGGAugccGGCGGCCu -3'
miRNA:   3'- ucacCGUGGUGUGgUUCU----UCGUCGGu -5'
26990 3' -55.5 NC_005809.1 + 18430 0.71 0.301226
Target:  5'- --aGGCGCUGgGCCAGGcgcGCAGCCGg -3'
miRNA:   3'- ucaCCGUGGUgUGGUUCuu-CGUCGGU- -5'
26990 3' -55.5 NC_005809.1 + 33371 0.71 0.301226
Target:  5'- cGU-GCGCCGCGCCGccGAGCAGgCCAa -3'
miRNA:   3'- uCAcCGUGGUGUGGUucUUCGUC-GGU- -5'
26990 3' -55.5 NC_005809.1 + 2846 0.7 0.325221
Target:  5'- cAGcGGCGCCAgCACCAGcGAGgGGCCu -3'
miRNA:   3'- -UCaCCGUGGU-GUGGUUcUUCgUCGGu -5'
26990 3' -55.5 NC_005809.1 + 31765 0.7 0.325221
Target:  5'- --aGGauucaGCCGCGCCGAGgcGCAGCa- -3'
miRNA:   3'- ucaCCg----UGGUGUGGUUCuuCGUCGgu -5'
26990 3' -55.5 NC_005809.1 + 15061 0.7 0.341991
Target:  5'- -----gACCGCGCCGAGAagcuGGCGGCCGa -3'
miRNA:   3'- ucaccgUGGUGUGGUUCU----UCGUCGGU- -5'
26990 3' -55.5 NC_005809.1 + 13718 0.7 0.350608
Target:  5'- cGUGGCGCgGCGCUggGAcAGCuucggcaaguccGGCCGc -3'
miRNA:   3'- uCACCGUGgUGUGGuuCU-UCG------------UCGGU- -5'
26990 3' -55.5 NC_005809.1 + 4429 0.7 0.350608
Target:  5'- ---cGUGCCGCGCCAgggGGAAGCcGCCAg -3'
miRNA:   3'- ucacCGUGGUGUGGU---UCUUCGuCGGU- -5'
26990 3' -55.5 NC_005809.1 + 30173 0.7 0.368299
Target:  5'- cAGuUGGCGCCagucggugaAgGCCAuGAAGUAGCCGc -3'
miRNA:   3'- -UC-ACCGUGG---------UgUGGUuCUUCGUCGGU- -5'
26990 3' -55.5 NC_005809.1 + 29461 0.69 0.377372
Target:  5'- -cUGGCACCAgGCgAcGAAGCgcgcGGCCAg -3'
miRNA:   3'- ucACCGUGGUgUGgUuCUUCG----UCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.