Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26993 | 5' | -54.7 | NC_005809.1 | + | 21393 | 0.66 | 0.667428 |
Target: 5'- cCAGCAGCAGGcCGcgcaGCAGGCcGCGc -3' miRNA: 3'- -GUCGUUGUCUaGCucc-UGUCCGaCGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 35360 | 0.66 | 0.667428 |
Target: 5'- gCGGC-GCAGAUgcugcCGuGGACAucgcgcugucccGGCUGCGu -3' miRNA: 3'- -GUCGuUGUCUA-----GCuCCUGU------------CCGACGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 32451 | 0.66 | 0.656116 |
Target: 5'- aGGCGugGccGGUaCGAGGACAGGCa--- -3' miRNA: 3'- gUCGUugU--CUA-GCUCCUGUCCGacgc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 4828 | 0.66 | 0.644781 |
Target: 5'- cCGGCGACAGGUCGccGuagucgaugaccAUAGGUUGCc -3' miRNA: 3'- -GUCGUUGUCUAGCucC------------UGUCCGACGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 409 | 0.66 | 0.628895 |
Target: 5'- cCAGCAGCAcggcgguGAUCGucGGCcguaccuugucguuGGGCUGCu -3' miRNA: 3'- -GUCGUUGU-------CUAGCucCUG--------------UCCGACGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 19961 | 0.66 | 0.622086 |
Target: 5'- aGGCAACccAGGUUucGGGCAGGCcGCc -3' miRNA: 3'- gUCGUUG--UCUAGcuCCUGUCCGaCGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 24082 | 0.67 | 0.610747 |
Target: 5'- gCGGCGACcGcgCGGGGcACGGGCaccccgcuacaUGCGc -3' miRNA: 3'- -GUCGUUGuCuaGCUCC-UGUCCG-----------ACGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 27450 | 0.67 | 0.599428 |
Target: 5'- cCAGCAugGGGUCGGGccuGGUAGGCaGCu -3' miRNA: 3'- -GUCGUugUCUAGCUC---CUGUCCGaCGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 16456 | 0.67 | 0.562336 |
Target: 5'- aCGGCGucgUAGAUCGGGGGCgugacggacaggucGGGC-GCGa -3' miRNA: 3'- -GUCGUu--GUCUAGCUCCUG--------------UCCGaCGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 13693 | 0.68 | 0.558992 |
Target: 5'- cCAGCAACuacgccagcagCGAGGACGuGGCgcgGCGc -3' miRNA: 3'- -GUCGUUGucua-------GCUCCUGU-CCGa--CGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 2170 | 0.68 | 0.543462 |
Target: 5'- uGGCgAACAGuugCGAGGugAGGCUa-- -3' miRNA: 3'- gUCG-UUGUCua-GCUCCugUCCGAcgc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 34021 | 0.68 | 0.532457 |
Target: 5'- cCAGgAugAGGUCGAGcGCGGcCUGCGa -3' miRNA: 3'- -GUCgUugUCUAGCUCcUGUCcGACGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 28056 | 0.68 | 0.521532 |
Target: 5'- uCGGCGACGGucugcUCGAacagcGGGCAGGUggccGCGg -3' miRNA: 3'- -GUCGUUGUCu----AGCU-----CCUGUCCGa---CGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 20296 | 0.68 | 0.521532 |
Target: 5'- cCAGUAGCGGGUUGcucGGcGGCcGGUUGCGa -3' miRNA: 3'- -GUCGUUGUCUAGC---UC-CUGuCCGACGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 7066 | 0.68 | 0.499954 |
Target: 5'- gGGCGGCAGcGUCGuuuGaACAGGCUGgCGg -3' miRNA: 3'- gUCGUUGUC-UAGCu--CcUGUCCGAC-GC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 5250 | 0.68 | 0.499954 |
Target: 5'- uCGGcCGGCAGGUCGGGGuC-GGCaaUGCGu -3' miRNA: 3'- -GUC-GUUGUCUAGCUCCuGuCCG--ACGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 11747 | 0.68 | 0.499954 |
Target: 5'- -uGCgAACuGAUCGGcGACAGGUUGCa -3' miRNA: 3'- guCG-UUGuCUAGCUcCUGUCCGACGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 34335 | 0.69 | 0.489314 |
Target: 5'- cCAGCGACuucgccGA-CGAGGGCAcGGCcGCGc -3' miRNA: 3'- -GUCGUUGu-----CUaGCUCCUGU-CCGaCGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 27792 | 0.69 | 0.489314 |
Target: 5'- cCAGCGacaucgugaaGCAGAUCGAcaccGACAcGCUGCGc -3' miRNA: 3'- -GUCGU----------UGUCUAGCUc---CUGUcCGACGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 3804 | 0.69 | 0.478781 |
Target: 5'- gGGCAGCAugaccaggcGGUCGGGGGCGccGUUGCGa -3' miRNA: 3'- gUCGUUGU---------CUAGCUCCUGUc-CGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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