miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26997 5' -58.6 NC_005809.1 + 15064 0.76 0.095901
Target:  5'- cGCGCCGAGaaGCUGGcGGCCGagGcCGCCg -3'
miRNA:   3'- -CGCGGCUC--CGACU-CCGGUagUaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 21104 0.69 0.327193
Target:  5'- aGCGCau-GGUcGAGGCCAaCAUCcuGCCg -3'
miRNA:   3'- -CGCGgcuCCGaCUCCGGUaGUAG--CGG- -5'
26997 5' -58.6 NC_005809.1 + 12448 0.68 0.360067
Target:  5'- -gGCCGGcGGCgUGuucuggcgcGGCC-UCAUCGCCu -3'
miRNA:   3'- cgCGGCU-CCG-ACu--------CCGGuAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 38315 0.66 0.491907
Target:  5'- aUGCCGGcGCUGAcGGCCggCAccgacuaCGCCa -3'
miRNA:   3'- cGCGGCUcCGACU-CCGGuaGUa------GCGG- -5'
26997 5' -58.6 NC_005809.1 + 18973 0.72 0.186102
Target:  5'- --aCCgGGGGCUGcacgcaugacGGCCAUCGUCGCCc -3'
miRNA:   3'- cgcGG-CUCCGACu---------CCGGUAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 19019 0.72 0.190639
Target:  5'- cUGCCGGcgaugucGGCcGAGGCCAUCGaccgcgugCGCCg -3'
miRNA:   3'- cGCGGCU-------CCGaCUCCGGUAGUa-------GCGG- -5'
26997 5' -58.6 NC_005809.1 + 37664 0.71 0.218214
Target:  5'- cGCuGCCGAcguuuccaccguGGCcgaaaacGAGGCCGcCGUCGCCg -3'
miRNA:   3'- -CG-CGGCU------------CCGa------CUCCGGUaGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 35712 0.71 0.228732
Target:  5'- cGUGCCGAcguGGUggGGGGCCuacgaaaaggcCGUCGCCg -3'
miRNA:   3'- -CGCGGCU---CCGa-CUCCGGua---------GUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 41755 0.7 0.261537
Target:  5'- -gGCCGAcguucggcaagGGCUG-GGCgCGgcgCGUCGCCg -3'
miRNA:   3'- cgCGGCU-----------CCGACuCCG-GUa--GUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 26316 0.69 0.31933
Target:  5'- cGCGCgCGAGGCcaacGCCAUC--CGCCa -3'
miRNA:   3'- -CGCG-GCUCCGacucCGGUAGuaGCGG- -5'
26997 5' -58.6 NC_005809.1 + 13197 0.7 0.281444
Target:  5'- cGCGCCGAguccgagGGCUGgggcaAGGCCAcCggCGCg -3'
miRNA:   3'- -CGCGGCU-------CCGAC-----UCCGGUaGuaGCGg -5'
26997 5' -58.6 NC_005809.1 + 35345 0.7 0.257565
Target:  5'- uCGCCGAGGgUGAGcgcggcgcagaugcuGCCGUggaCAUCGCg -3'
miRNA:   3'- cGCGGCUCCgACUC---------------CGGUA---GUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 16791 0.75 0.113544
Target:  5'- cGCGCCGcGcGCaucGcGGCCAUCGUUGCCg -3'
miRNA:   3'- -CGCGGCuC-CGa--CuCCGGUAGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 14230 0.69 0.303282
Target:  5'- cGCGCugcccgaCGAGGCcaAGGCCAUCGaguccgaCGCCg -3'
miRNA:   3'- -CGCG-------GCUCCGacUCCGGUAGUa------GCGG- -5'
26997 5' -58.6 NC_005809.1 + 13274 0.73 0.176361
Target:  5'- aGUGCUG-GGCaaGGGCCAgcaguUCGUCGCCu -3'
miRNA:   3'- -CGCGGCuCCGacUCCGGU-----AGUAGCGG- -5'
26997 5' -58.6 NC_005809.1 + 34619 0.71 0.229927
Target:  5'- cGCGCCGAGGCcacGGGcaaGCUGUCGgaaauccucgCGCCg -3'
miRNA:   3'- -CGCGGCUCCGa--CUC---CGGUAGUa---------GCGG- -5'
26997 5' -58.6 NC_005809.1 + 33722 0.69 0.31933
Target:  5'- gGCGaCCGAGGCcaacgcgcuGGCCcgCGUUGCg -3'
miRNA:   3'- -CGC-GGCUCCGacu------CCGGuaGUAGCGg -5'
26997 5' -58.6 NC_005809.1 + 27636 0.68 0.354991
Target:  5'- uCGCCGAguugggcgcgcagucGGCacuUGAGGCCGgccagCAgcagaUCGCCg -3'
miRNA:   3'- cGCGGCU---------------CCG---ACUCCGGUa----GU-----AGCGG- -5'
26997 5' -58.6 NC_005809.1 + 12593 0.73 0.181173
Target:  5'- cCGuUCGAcGGCUGcauccAGGCCGUCGUgCGCCg -3'
miRNA:   3'- cGC-GGCU-CCGAC-----UCCGGUAGUA-GCGG- -5'
26997 5' -58.6 NC_005809.1 + 19357 0.72 0.207014
Target:  5'- -gGCCGAGGCcGAGGCCGaauUCAccgacgagGCCg -3'
miRNA:   3'- cgCGGCUCCGaCUCCGGU---AGUag------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.