Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26999 | 3' | -52.4 | NC_005809.1 | + | 42352 | 1.07 | 0.001478 |
Target: 5'- cUACAACAUGCGGCAUACCUACGCCACc -3' miRNA: 3'- -AUGUUGUACGCCGUAUGGAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 15115 | 0.77 | 0.204926 |
Target: 5'- cGCGGCGcGCuGGCAUACCaGCGCCAg -3' miRNA: 3'- aUGUUGUaCG-CCGUAUGGaUGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 23747 | 0.76 | 0.235652 |
Target: 5'- cGCAGCA-GCGcCAUGCCgGCGCCACc -3' miRNA: 3'- aUGUUGUaCGCcGUAUGGaUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 29234 | 0.75 | 0.262941 |
Target: 5'- cGCGACuucgGCGGCGaccugccgaaaGCCUACGCCGCc -3' miRNA: 3'- aUGUUGua--CGCCGUa----------UGGAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 14731 | 0.75 | 0.285052 |
Target: 5'- cUugAGCA-GCGGCGcgGCCgGCGCCACc -3' miRNA: 3'- -AugUUGUaCGCCGUa-UGGaUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 24472 | 0.73 | 0.342275 |
Target: 5'- gACGACcUGCuGCuugGCCUGCGCCAg -3' miRNA: 3'- aUGUUGuACGcCGua-UGGAUGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 26435 | 0.73 | 0.360078 |
Target: 5'- -uCAGCGUGCGGCcgcaguCCUACGUCGg -3' miRNA: 3'- auGUUGUACGCCGuau---GGAUGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 2426 | 0.73 | 0.360078 |
Target: 5'- gUACGGCA-GCaGGCcgGCCUcgaagaucgGCGCCACg -3' miRNA: 3'- -AUGUUGUaCG-CCGuaUGGA---------UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 19856 | 0.73 | 0.369219 |
Target: 5'- aGCAGCGUGgugaguucgGGCGUGCCgaagGCGUCGCg -3' miRNA: 3'- aUGUUGUACg--------CCGUAUGGa---UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 26830 | 0.72 | 0.378517 |
Target: 5'- aACGAgGUGCGGUAUgucgagcgcaugGCCUcGCGCCAg -3' miRNA: 3'- aUGUUgUACGCCGUA------------UGGA-UGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 34037 | 0.72 | 0.387971 |
Target: 5'- cGCGGC-UGuCGaGCGUuucaucGCCUACGCCACg -3' miRNA: 3'- aUGUUGuAC-GC-CGUA------UGGAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 23262 | 0.71 | 0.426289 |
Target: 5'- aACAGCAUGgucagguCGGUGUcgGCgUGCGCCACg -3' miRNA: 3'- aUGUUGUAC-------GCCGUA--UGgAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 23167 | 0.71 | 0.427301 |
Target: 5'- gACAGCAUGgGGaugcuggaaACCUACGCCGa -3' miRNA: 3'- aUGUUGUACgCCgua------UGGAUGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 1039 | 0.71 | 0.4583 |
Target: 5'- cACGGCcgGCGGCA-GCauguCGCCGCg -3' miRNA: 3'- aUGUUGuaCGCCGUaUGgau-GCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 7537 | 0.71 | 0.468897 |
Target: 5'- gUGCGcUcgGCGGCGUGCUcgaucugcgGCGCCACc -3' miRNA: 3'- -AUGUuGuaCGCCGUAUGGa--------UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 4410 | 0.7 | 0.479619 |
Target: 5'- cUugAGCGUGCGGCAgucguaggucgUACCcg-GCCGCa -3' miRNA: 3'- -AugUUGUACGCCGU-----------AUGGaugCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 36106 | 0.7 | 0.490459 |
Target: 5'- cGCGGCGUGCaGUu--CCUGCGCgACg -3' miRNA: 3'- aUGUUGUACGcCGuauGGAUGCGgUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 7209 | 0.7 | 0.501411 |
Target: 5'- cGCGAUGUccaCGGCAgcAUCUGCGCCGCg -3' miRNA: 3'- aUGUUGUAc--GCCGUa-UGGAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 35954 | 0.7 | 0.501411 |
Target: 5'- cGCGAagcugGCGGCGga-CUACGCCAUg -3' miRNA: 3'- aUGUUgua--CGCCGUaugGAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 36390 | 0.7 | 0.51247 |
Target: 5'- cUGCaAACGcUGCGGCAagaccgGCCUGCGCUg- -3' miRNA: 3'- -AUG-UUGU-ACGCCGUa-----UGGAUGCGGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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