miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26999 3' -52.4 NC_005809.1 + 21993 0.67 0.67373
Target:  5'- cGCAGCGUGCGGguU-UCgucgGCGCCu- -3'
miRNA:   3'- aUGUUGUACGCCguAuGGa---UGCGGug -5'
26999 3' -52.4 NC_005809.1 + 20736 0.69 0.557622
Target:  5'- -cCGACAUGCugcuGGCGccguagagGCgCUGCGCCGCg -3'
miRNA:   3'- auGUUGUACG----CCGUa-------UG-GAUGCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 31627 0.69 0.566798
Target:  5'- cGCAGCGUGgcagggccucaaGGCAUACCgu-GCCGCu -3'
miRNA:   3'- aUGUUGUACg-----------CCGUAUGGaugCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 7764 0.69 0.569098
Target:  5'- uUGCAGCAc-CGGCGcgAUCUGCGCCGg -3'
miRNA:   3'- -AUGUUGUacGCCGUa-UGGAUGCGGUg -5'
26999 3' -52.4 NC_005809.1 + 32901 0.68 0.603834
Target:  5'- gACAACAagaacUGCGGCcacgGCCUGCacgGCUGCu -3'
miRNA:   3'- aUGUUGU-----ACGCCGua--UGGAUG---CGGUG- -5'
26999 3' -52.4 NC_005809.1 + 37219 0.68 0.615482
Target:  5'- cGCGguGCAgGCGGCcacgcagcgcgAUGCCaugcUGCGCCACg -3'
miRNA:   3'- aUGU--UGUaCGCCG-----------UAUGG----AUGCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 17638 0.68 0.638814
Target:  5'- cGCAuCGUGCGGCAg---UACGgCCACg -3'
miRNA:   3'- aUGUuGUACGCCGUauggAUGC-GGUG- -5'
26999 3' -52.4 NC_005809.1 + 11130 0.68 0.638814
Target:  5'- --aAACGUGCGaGCAguucgGCCUGCugcuggGCCGCc -3'
miRNA:   3'- augUUGUACGC-CGUa----UGGAUG------CGGUG- -5'
26999 3' -52.4 NC_005809.1 + 30082 0.67 0.662119
Target:  5'- -----uGUGCGGC--GCCcggGCGCCACg -3'
miRNA:   3'- auguugUACGCCGuaUGGa--UGCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 39986 0.69 0.546212
Target:  5'- uUGCAACAggGCGGCAaGCgcGCGCaCGCg -3'
miRNA:   3'- -AUGUUGUa-CGCCGUaUGgaUGCG-GUG- -5'
26999 3' -52.4 NC_005809.1 + 36390 0.7 0.51247
Target:  5'- cUGCaAACGcUGCGGCAagaccgGCCUGCGCUg- -3'
miRNA:   3'- -AUG-UUGU-ACGCCGUa-----UGGAUGCGGug -5'
26999 3' -52.4 NC_005809.1 + 7209 0.7 0.501411
Target:  5'- cGCGAUGUccaCGGCAgcAUCUGCGCCGCg -3'
miRNA:   3'- aUGUUGUAc--GCCGUa-UGGAUGCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 23747 0.76 0.235652
Target:  5'- cGCAGCA-GCGcCAUGCCgGCGCCACc -3'
miRNA:   3'- aUGUUGUaCGCcGUAUGGaUGCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 24472 0.73 0.342275
Target:  5'- gACGACcUGCuGCuugGCCUGCGCCAg -3'
miRNA:   3'- aUGUUGuACGcCGua-UGGAUGCGGUg -5'
26999 3' -52.4 NC_005809.1 + 2426 0.73 0.360078
Target:  5'- gUACGGCA-GCaGGCcgGCCUcgaagaucgGCGCCACg -3'
miRNA:   3'- -AUGUUGUaCG-CCGuaUGGA---------UGCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 19856 0.73 0.369219
Target:  5'- aGCAGCGUGgugaguucgGGCGUGCCgaagGCGUCGCg -3'
miRNA:   3'- aUGUUGUACg--------CCGUAUGGa---UGCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 34037 0.72 0.387971
Target:  5'- cGCGGC-UGuCGaGCGUuucaucGCCUACGCCACg -3'
miRNA:   3'- aUGUUGuAC-GC-CGUA------UGGAUGCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 23262 0.71 0.426289
Target:  5'- aACAGCAUGgucagguCGGUGUcgGCgUGCGCCACg -3'
miRNA:   3'- aUGUUGUAC-------GCCGUA--UGgAUGCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 1039 0.71 0.4583
Target:  5'- cACGGCcgGCGGCA-GCauguCGCCGCg -3'
miRNA:   3'- aUGUUGuaCGCCGUaUGgau-GCGGUG- -5'
26999 3' -52.4 NC_005809.1 + 36106 0.7 0.490459
Target:  5'- cGCGGCGUGCaGUu--CCUGCGCgACg -3'
miRNA:   3'- aUGUUGUACGcCGuauGGAUGCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.