Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26999 | 3' | -52.4 | NC_005809.1 | + | 210 | 0.68 | 0.650476 |
Target: 5'- aGCAuCAUgGUGGCGUAggUAUGCCGCa -3' miRNA: 3'- aUGUuGUA-CGCCGUAUggAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 1039 | 0.71 | 0.4583 |
Target: 5'- cACGGCcgGCGGCA-GCauguCGCCGCg -3' miRNA: 3'- aUGUUGuaCGCCGUaUGgau-GCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 1080 | 0.66 | 0.763915 |
Target: 5'- aAC-GCGcGCGGUAgauUGCCUugGCCGu -3' miRNA: 3'- aUGuUGUaCGCCGU---AUGGAugCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 1747 | 0.66 | 0.742008 |
Target: 5'- aACAcCggGCGGuCAUggccgGCCUGCGCCugGCg -3' miRNA: 3'- aUGUuGuaCGCC-GUA-----UGGAUGCGG--UG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 2135 | 0.66 | 0.774647 |
Target: 5'- gUGCAGCAgcCGGUcaACC-GCGCCGCc -3' miRNA: 3'- -AUGUUGUacGCCGuaUGGaUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 2426 | 0.73 | 0.360078 |
Target: 5'- gUACGGCA-GCaGGCcgGCCUcgaagaucgGCGCCACg -3' miRNA: 3'- -AUGUUGUaCG-CCGuaUGGA---------UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 4047 | 0.66 | 0.753031 |
Target: 5'- cGCGGCGaGCGGCAgGCCaGCgGCC-Ca -3' miRNA: 3'- aUGUUGUaCGCCGUaUGGaUG-CGGuG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 4410 | 0.7 | 0.479619 |
Target: 5'- cUugAGCGUGCGGCAgucguaggucgUACCcg-GCCGCa -3' miRNA: 3'- -AugUUGUACGCCGU-----------AUGGaugCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 5441 | 0.66 | 0.719603 |
Target: 5'- gGCGGCGUGggcgagguCGGUAUcgACCaucACGCCGCg -3' miRNA: 3'- aUGUUGUAC--------GCCGUA--UGGa--UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 7209 | 0.7 | 0.501411 |
Target: 5'- cGCGAUGUccaCGGCAgcAUCUGCGCCGCg -3' miRNA: 3'- aUGUUGUAc--GCCGUa-UGGAUGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 7537 | 0.71 | 0.468897 |
Target: 5'- gUGCGcUcgGCGGCGUGCUcgaucugcgGCGCCACc -3' miRNA: 3'- -AUGUuGuaCGCCGUAUGGa--------UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 7764 | 0.69 | 0.569098 |
Target: 5'- uUGCAGCAc-CGGCGcgAUCUGCGCCGg -3' miRNA: 3'- -AUGUUGUacGCCGUa-UGGAUGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 8000 | 0.69 | 0.580632 |
Target: 5'- cACGGCGU-CGGaCGUGCCcuugGCGCCAg -3' miRNA: 3'- aUGUUGUAcGCC-GUAUGGa---UGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 8208 | 0.66 | 0.753031 |
Target: 5'- aGCGACAUgGCGGCcaguuCgUGCGCgGCc -3' miRNA: 3'- aUGUUGUA-CGCCGuau--GgAUGCGgUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 8339 | 0.68 | 0.603834 |
Target: 5'- uUGC-GCGUGCGuGCucaugccaGUACCUccuGCGCCGCc -3' miRNA: 3'- -AUGuUGUACGC-CG--------UAUGGA---UGCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 8452 | 0.66 | 0.718471 |
Target: 5'- cGCGAUGU-CGGCGUcgaggugGCCUGCgauGCCGCa -3' miRNA: 3'- aUGUUGUAcGCCGUA-------UGGAUG---CGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 8778 | 0.66 | 0.728618 |
Target: 5'- gGCAGCAcGCGGCGcacgaugggucgGCC-GCGCCGg -3' miRNA: 3'- aUGUUGUaCGCCGUa-----------UGGaUGCGGUg -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 10935 | 0.67 | 0.696807 |
Target: 5'- aGCGGCA--CGGUAUGCCUugaggcccUGCCACg -3' miRNA: 3'- aUGUUGUacGCCGUAUGGAu-------GCGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 11130 | 0.68 | 0.638814 |
Target: 5'- --aAACGUGCGaGCAguucgGCCUGCugcuggGCCGCc -3' miRNA: 3'- augUUGUACGC-CGUa----UGGAUG------CGGUG- -5' |
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26999 | 3' | -52.4 | NC_005809.1 | + | 11198 | 0.66 | 0.742008 |
Target: 5'- --gAugGUGCGGUcaAUGCCgcgcaugacCGCCACg -3' miRNA: 3'- augUugUACGCCG--UAUGGau-------GCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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