Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27016 | 3' | -62.9 | NC_005832.1 | + | 8276 | 0.66 | 0.566283 |
Target: 5'- cCCGGCuCccgucaggauaucuaGGGACuccucgaagGCCGCCCUgcucaGGGgUCCg -3' miRNA: 3'- -GGCUG-G---------------UCCUG---------CGGCGGGA-----CCCgAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 45789 | 0.67 | 0.505112 |
Target: 5'- -gGGCCAGGGC-CUGUCCgagaGGCUCg -3' miRNA: 3'- ggCUGGUCCUGcGGCGGGac--CCGAGg -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 81429 | 0.66 | 0.523957 |
Target: 5'- --cACCGGGACaguaGCCGCUCUuGGC-CCa -3' miRNA: 3'- ggcUGGUCCUG----CGGCGGGAcCCGaGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 33089 | 0.7 | 0.322649 |
Target: 5'- uUGACCgGGGugGCCGUCCaguuccugaUGGGCcucgcUCCc -3' miRNA: 3'- gGCUGG-UCCugCGGCGGG---------ACCCG-----AGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 41968 | 0.66 | 0.562394 |
Target: 5'- gCCGGggugagcuucucCCAGGGuuUGCCGUCUgggcacggGGGCUCg -3' miRNA: 3'- -GGCU------------GGUCCU--GCGGCGGGa-------CCCGAGg -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 26589 | 0.71 | 0.295227 |
Target: 5'- gCCG-CCGGGugGCUGCCCgacaCUCCc -3' miRNA: 3'- -GGCuGGUCCugCGGCGGGacccGAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 21229 | 0.72 | 0.263546 |
Target: 5'- aCGGCCGGGGCGUC-CCUacGGGCcCCg -3' miRNA: 3'- gGCUGGUCCUGCGGcGGGa-CCCGaGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 32576 | 0.67 | 0.505112 |
Target: 5'- gCGGCCAGGuacugccuccuCGCgGCCuCUGGaGCggUCCc -3' miRNA: 3'- gGCUGGUCCu----------GCGgCGG-GACC-CG--AGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 88203 | 0.72 | 0.257551 |
Target: 5'- aCCGACagaCAGGGagcagGCCGCUUUGGGUUCg -3' miRNA: 3'- -GGCUG---GUCCUg----CGGCGGGACCCGAGg -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 3163 | 0.66 | 0.543064 |
Target: 5'- cCCaGAUCAGGGCGUCGgucguaugcuuuUCCUGGGUa-- -3' miRNA: 3'- -GG-CUGGUCCUGCGGC------------GGGACCCGagg -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 97079 | 0.66 | 0.537306 |
Target: 5'- -aGGcCCAGGAgGCCcugucgaccucagacGCCCUGGaGCaggCCg -3' miRNA: 3'- ggCU-GGUCCUgCGG---------------CGGGACC-CGa--GG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 94097 | 0.68 | 0.399267 |
Target: 5'- aCCGuCgAGGGCGaaGCCCgaaaauaggGGGUUCUg -3' miRNA: 3'- -GGCuGgUCCUGCggCGGGa--------CCCGAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 42694 | 0.69 | 0.394353 |
Target: 5'- cCUGGCCAacaagaggguGGACGCCaccgggccccuuaucGCCUUccuucuggacGGGCUCCu -3' miRNA: 3'- -GGCUGGU----------CCUGCGG---------------CGGGA----------CCCGAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 97253 | 0.69 | 0.359535 |
Target: 5'- aCGACCuGGACGCCGUagucgccagCCUGGcCggCCu -3' miRNA: 3'- gGCUGGuCCUGCGGCG---------GGACCcGa-GG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 52797 | 0.7 | 0.337056 |
Target: 5'- gCGucCCGGGGCcauGCUGCCCagGGGCUUg -3' miRNA: 3'- gGCu-GGUCCUG---CGGCGGGa-CCCGAGg -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 24816 | 0.66 | 0.514499 |
Target: 5'- aCGACCAacccucucucuGGGCGCagGCUUUGGGCa-- -3' miRNA: 3'- gGCUGGU-----------CCUGCGg-CGGGACCCGagg -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 33580 | 0.66 | 0.514499 |
Target: 5'- aCCuACCuGGACGCCcuGCCUUuGGCcgCCa -3' miRNA: 3'- -GGcUGGuCCUGCGG--CGGGAcCCGa-GG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 19713 | 0.66 | 0.523957 |
Target: 5'- aCCGGCCAagaccgucagggGGAcCGUCagGCCCagGGGCUUUg -3' miRNA: 3'- -GGCUGGU------------CCU-GCGG--CGGGa-CCCGAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 55833 | 0.66 | 0.53348 |
Target: 5'- gCCGGUCAGGGcCGCCGUgguggUGGGgUCCa -3' miRNA: 3'- -GGCUGGUCCU-GCGGCGgg---ACCCgAGG- -5' |
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27016 | 3' | -62.9 | NC_005832.1 | + | 41418 | 0.66 | 0.53348 |
Target: 5'- aUGACUaccgAGGGCGCCuCCCUGacGGCggcggCCu -3' miRNA: 3'- gGCUGG----UCCUGCGGcGGGAC--CCGa----GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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