Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27019 | 5' | -57.2 | NC_005832.1 | + | 2119 | 1.08 | 0.001962 |
Target: 5'- gGGCCACGACCAUGACGCCGUCGUCGUc -3' miRNA: 3'- -CCGGUGCUGGUACUGCGGCAGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 48314 | 0.8 | 0.155582 |
Target: 5'- uGGUCACGGCCugacAUGACGCCGUC-UCGa -3' miRNA: 3'- -CCGGUGCUGG----UACUGCGGCAGcAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 36085 | 0.79 | 0.205242 |
Target: 5'- uGGaCCACGACCGcccUGGCGCUGgCGUCGg -3' miRNA: 3'- -CC-GGUGCUGGU---ACUGCGGCaGCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 28054 | 0.76 | 0.281022 |
Target: 5'- uGCCACcuuGACCAccGCGUCGUCGUCGUc -3' miRNA: 3'- cCGGUG---CUGGUacUGCGGCAGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 55125 | 0.73 | 0.419945 |
Target: 5'- cGGCCACGucuACCuccGugGCCGUCGgguUCGa -3' miRNA: 3'- -CCGGUGC---UGGua-CugCGGCAGC---AGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 67032 | 0.72 | 0.503294 |
Target: 5'- uGGCgGCGGCCGUGGCgaggGCCG-CGggCGUa -3' miRNA: 3'- -CCGgUGCUGGUACUG----CGGCaGCa-GCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 95286 | 0.71 | 0.513013 |
Target: 5'- aGGCCACGcUCAUGGgGuuGgacUCGUCGUa -3' miRNA: 3'- -CCGGUGCuGGUACUgCggC---AGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 39475 | 0.71 | 0.513013 |
Target: 5'- -cCCugGGCCcUGGuCGCCGUCGUCc- -3' miRNA: 3'- ccGGugCUGGuACU-GCGGCAGCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 97241 | 0.71 | 0.521825 |
Target: 5'- uGGCCaaaaagaACGACCugGACGCCGUaGUCGc -3' miRNA: 3'- -CCGG-------UGCUGGuaCUGCGGCAgCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 90933 | 0.71 | 0.522808 |
Target: 5'- uGCCAUGGCCAcguUGGUGCCGaUGUCGUu -3' miRNA: 3'- cCGGUGCUGGU---ACUGCGGCaGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 5343 | 0.69 | 0.633957 |
Target: 5'- gGGCCACcaGACCcucGACGgCGgggUCGUCGUg -3' miRNA: 3'- -CCGGUG--CUGGua-CUGCgGC---AGCAGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 91307 | 0.69 | 0.633957 |
Target: 5'- uGGCCACGuccagcuugGCCAUGACGgCCGaguaGUCu- -3' miRNA: 3'- -CCGGUGC---------UGGUACUGC-GGCag--CAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 42315 | 0.69 | 0.644199 |
Target: 5'- uGGCCugGACCAaGACagucuGCC-UCGUCu- -3' miRNA: 3'- -CCGGugCUGGUaCUG-----CGGcAGCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 2317 | 0.69 | 0.654431 |
Target: 5'- uGGCaauuugCugGACCAUGACGuCCGUgG-CGUc -3' miRNA: 3'- -CCG------GugCUGGUACUGC-GGCAgCaGCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 72058 | 0.69 | 0.664646 |
Target: 5'- aGCCGUGAUaGUGGCgGCCGUCGUgGUg -3' miRNA: 3'- cCGGUGCUGgUACUG-CGGCAGCAgCA- -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 65010 | 0.69 | 0.664646 |
Target: 5'- cGCCGCG-CUGUGGCGCaCGUgGUCc- -3' miRNA: 3'- cCGGUGCuGGUACUGCG-GCAgCAGca -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 47790 | 0.69 | 0.664646 |
Target: 5'- cGGCCAgGACCuc--CGCCucgggguaGUCGUCGg -3' miRNA: 3'- -CCGGUgCUGGuacuGCGG--------CAGCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 36571 | 0.68 | 0.684988 |
Target: 5'- aGGCCAUGACCGaGGcCGCCaggGUCGg -3' miRNA: 3'- -CCGGUGCUGGUaCU-GCGGcagCAGCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 51863 | 0.68 | 0.695098 |
Target: 5'- uGGCUcagGCGGCCuuUGACGCCGU-GUgGa -3' miRNA: 3'- -CCGG---UGCUGGu-ACUGCGGCAgCAgCa -5' |
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27019 | 5' | -57.2 | NC_005832.1 | + | 60311 | 0.68 | 0.705155 |
Target: 5'- gGGuuCCACGuCCGUgGugGCCGugaggaacUCGUCGUa -3' miRNA: 3'- -CC--GGUGCuGGUA-CugCGGC--------AGCAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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