miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27024 5' -57.8 NC_005832.1 + 39837 0.66 0.792286
Target:  5'- aGGGUucGGACGGagacgugggagguauGGGGcCAGAGGGCccaaagGGAg -3'
miRNA:   3'- -CCCA--CCUGCC---------------CUCCuGUCUCCUG------UCU- -5'
27024 5' -57.8 NC_005832.1 + 78927 0.66 0.788634
Target:  5'- uGGUGGAgaugGGGAGGGuugucagcguCAGGcuGGACGGGa -3'
miRNA:   3'- cCCACCUg---CCCUCCU----------GUCU--CCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 80802 0.66 0.783112
Target:  5'- gGGGUccucguaGACGGGAGGACcgccgucggaccaagAGGGGuuGGGg -3'
miRNA:   3'- -CCCAc------CUGCCCUCCUG---------------UCUCCugUCU- -5'
27024 5' -57.8 NC_005832.1 + 28069 0.66 0.779404
Target:  5'- aGGGUGGugGGGAccaaGaGGCccuuugccguGGAGGuuGCGGGc -3'
miRNA:   3'- -CCCACCugCCCU----C-CUG----------UCUCC--UGUCU- -5'
27024 5' -57.8 NC_005832.1 + 87485 0.66 0.770042
Target:  5'- aGGaUGGACGcGAGGACc-AGGGCAGc -3'
miRNA:   3'- cCC-ACCUGCcCUCCUGucUCCUGUCu -5'
27024 5' -57.8 NC_005832.1 + 51035 0.66 0.760556
Target:  5'- aGGUGGgaccgACGGGcAGGugGGAccGACAGGc -3'
miRNA:   3'- cCCACC-----UGCCC-UCCugUCUc-CUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 10791 0.66 0.750956
Target:  5'- aGGaGGugGGGAucGGcuGCGGAGGcCAGGa -3'
miRNA:   3'- cCCaCCugCCCU--CC--UGUCUCCuGUCU- -5'
27024 5' -57.8 NC_005832.1 + 66868 0.67 0.740275
Target:  5'- aGGG-GGuCGGGAacgacgaGGAUAGuguccaGGGACAGGu -3'
miRNA:   3'- -CCCaCCuGCCCU-------CCUGUC------UCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 92137 0.67 0.73145
Target:  5'- aGGUGGGagaguuuuGGAGGGCGGuggcagacAGGAUAGAg -3'
miRNA:   3'- cCCACCUgc------CCUCCUGUC--------UCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 75085 0.67 0.711598
Target:  5'- aGGUGGcugucugucAUGGGAGGA-GGAGuGGCGGGc -3'
miRNA:   3'- cCCACC---------UGCCCUCCUgUCUC-CUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 7903 0.67 0.701567
Target:  5'- uGGcaGACuGGGAGaGGguGAGGACAGAc -3'
miRNA:   3'- cCCacCUG-CCCUC-CUguCUCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 2663 0.67 0.701567
Target:  5'- gGGGUGGGUGuGGaAGGACAcGAGGccguCGGGg -3'
miRNA:   3'- -CCCACCUGC-CC-UCCUGU-CUCCu---GUCU- -5'
27024 5' -57.8 NC_005832.1 + 92879 0.67 0.691476
Target:  5'- uGG-GGAagcuccUGGGAGGACAGAuGGACu-- -3'
miRNA:   3'- cCCaCCU------GCCCUCCUGUCU-CCUGucu -5'
27024 5' -57.8 NC_005832.1 + 6225 0.67 0.689451
Target:  5'- aGGcaGGccgcgagcuccuCGGGAGGGCAGGGGaugGCAGAg -3'
miRNA:   3'- -CCcaCCu-----------GCCCUCCUGUCUCC---UGUCU- -5'
27024 5' -57.8 NC_005832.1 + 1949 0.68 0.681335
Target:  5'- ---cGGACaGGAGG-CAGGuGGACAGGg -3'
miRNA:   3'- cccaCCUGcCCUCCuGUCU-CCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 6219 0.68 0.681335
Target:  5'- -uGUGGACuGuGGAGGAgGGugcAGGAUAGAg -3'
miRNA:   3'- ccCACCUG-C-CCUCCUgUC---UCCUGUCU- -5'
27024 5' -57.8 NC_005832.1 + 12538 0.68 0.681335
Target:  5'- -cGUGGACGGGGcGGCGGcGGAUGGu -3'
miRNA:   3'- ccCACCUGCCCUcCUGUCuCCUGUCu -5'
27024 5' -57.8 NC_005832.1 + 94366 0.68 0.681335
Target:  5'- aGGG-GaGACGGGuGGACugcguGAGGACc-- -3'
miRNA:   3'- -CCCaC-CUGCCCuCCUGu----CUCCUGucu -5'
27024 5' -57.8 NC_005832.1 + 12013 0.68 0.670134
Target:  5'- aGGcUGGGCcGGAGGAgucuugaCGGGGGugGGAu -3'
miRNA:   3'- cCC-ACCUGcCCUCCU-------GUCUCCugUCU- -5'
27024 5' -57.8 NC_005832.1 + 66179 0.68 0.66094
Target:  5'- gGGGUGGGaGGGAcagcuaGACAGGuGGAUGGAc -3'
miRNA:   3'- -CCCACCUgCCCUc-----CUGUCU-CCUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.