Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27024 | 5' | -57.8 | NC_005832.1 | + | 59906 | 0.68 | 0.640453 |
Target: 5'- --cUGGAUGaGGAGGcucUGGAGGGCAGAg -3' miRNA: 3'- cccACCUGC-CCUCCu--GUCUCCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 67466 | 0.68 | 0.640453 |
Target: 5'- cGGUGGcgggucUGGGGGGAgCGgucuuGAGGACGGAa -3' miRNA: 3'- cCCACCu-----GCCCUCCU-GU-----CUCCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 37979 | 0.69 | 0.630195 |
Target: 5'- ------gUGGGAGGACAGAGGGuCGGAu -3' miRNA: 3'- cccaccuGCCCUCCUGUCUCCU-GUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 115 | 0.69 | 0.599461 |
Target: 5'- uGGGgGGAgUGGGGGGAUcugguuugGGAGGAguGGg -3' miRNA: 3'- -CCCaCCU-GCCCUCCUG--------UCUCCUguCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 56021 | 0.69 | 0.599461 |
Target: 5'- aGGGgaacaaucucUGGucaucagaACGGGAGGACAGAcuacugggGGACGGu -3' miRNA: 3'- -CCC----------ACC--------UGCCCUCCUGUCU--------CCUGUCu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 36057 | 0.69 | 0.599461 |
Target: 5'- gGGGUGGGcCGGGuGGACGcuccuGGGCuGGAc -3' miRNA: 3'- -CCCACCU-GCCCuCCUGUcu---CCUG-UCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 9307 | 0.69 | 0.590275 |
Target: 5'- cGGUGGGCaGGAGGugcguggacugggauCAGAGGACc-- -3' miRNA: 3'- cCCACCUGcCCUCCu--------------GUCUCCUGucu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 54356 | 0.7 | 0.568944 |
Target: 5'- uGG-GGGCcuuuuucggcgGGGAGGACAGcacgguGGACAGGg -3' miRNA: 3'- cCCaCCUG-----------CCCUCCUGUCu-----CCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 79972 | 0.7 | 0.558852 |
Target: 5'- aGGUGGAggaGGGAGGugGG-GGACc-- -3' miRNA: 3'- cCCACCUg--CCCUCCugUCuCCUGucu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 5002 | 0.7 | 0.548811 |
Target: 5'- -cGUGGACaGGGuccuGGGCAGGGGAaAGGg -3' miRNA: 3'- ccCACCUG-CCCu---CCUGUCUCCUgUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 9898 | 0.7 | 0.538827 |
Target: 5'- uGGGgGGACGGcGcuguacucAGGGCGGAGGgagGCAGGc -3' miRNA: 3'- -CCCaCCUGCC-C--------UCCUGUCUCC---UGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 43829 | 0.7 | 0.525943 |
Target: 5'- cGGUGGuggccaucaugacgGCGGGAGGcuucaaccaAGAGGACAGc -3' miRNA: 3'- cCCACC--------------UGCCCUCCug-------UCUCCUGUCu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 92457 | 0.7 | 0.519053 |
Target: 5'- uGGUGGACGacGAGGACGacGAGGAcCAGu -3' miRNA: 3'- cCCACCUGCc-CUCCUGU--CUCCU-GUCu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 21133 | 0.7 | 0.519053 |
Target: 5'- aGGccGGCGGGAgcugGGAUccuGGAGGACAGAg -3' miRNA: 3'- cCCacCUGCCCU----CCUG---UCUCCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 66112 | 0.72 | 0.431517 |
Target: 5'- cGGGaGGACGGGaAGGgaGCAGgaccaccgaucccaGGGACAGGu -3' miRNA: 3'- -CCCaCCUGCCC-UCC--UGUC--------------UCCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 42628 | 0.72 | 0.425276 |
Target: 5'- gGGGUGGAUGGucaaGAGGAUGGcGGACGc- -3' miRNA: 3'- -CCCACCUGCC----CUCCUGUCuCCUGUcu -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 39263 | 0.73 | 0.407747 |
Target: 5'- gGGGaUGGGCGGGAucuGGCGGAGGcuCGGGa -3' miRNA: 3'- -CCC-ACCUGCCCUc--CUGUCUCCu-GUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 87953 | 0.74 | 0.350097 |
Target: 5'- -aGUGGAcCGGGAGGACcGAGGA-AGAg -3' miRNA: 3'- ccCACCU-GCCCUCCUGuCUCCUgUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 6511 | 0.75 | 0.30267 |
Target: 5'- gGGGUGucuguggcccuguGCGGGgccaGGGACAGGGGGCAGGc -3' miRNA: 3'- -CCCACc------------UGCCC----UCCUGUCUCCUGUCU- -5' |
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27024 | 5' | -57.8 | NC_005832.1 | + | 90553 | 0.75 | 0.284197 |
Target: 5'- gGGGUgccugagGGACGGGAGGcCcGAGGACAa- -3' miRNA: 3'- -CCCA-------CCUGCCCUCCuGuCUCCUGUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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