miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 5' -54.9 NC_005832.1 + 9466 1.14 0.001304
Target:  5'- cGGCGGACGAGGACACCCUAGAGUUCCu -3'
miRNA:   3'- -CCGCCUGCUCCUGUGGGAUCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 540 0.8 0.239225
Target:  5'- cGGCGGGguccgcgucCGAGGACACCCUGcucacGAGcUCCc -3'
miRNA:   3'- -CCGCCU---------GCUCCUGUGGGAU-----CUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 72252 0.79 0.251233
Target:  5'- gGGUGGugGAaaaGGACgaagucGCCCUAGAGUuUCCa -3'
miRNA:   3'- -CCGCCugCU---CCUG------UGGGAUCUCA-AGG- -5'
27027 5' -54.9 NC_005832.1 + 32244 0.79 0.27017
Target:  5'- aGGgGGGCGAGGcugacCGCCCUAGAGaacuggUCCc -3'
miRNA:   3'- -CCgCCUGCUCCu----GUGGGAUCUCa-----AGG- -5'
27027 5' -54.9 NC_005832.1 + 8127 0.78 0.311459
Target:  5'- gGGCGGccuuCGAGGAguCCCUAGAuaUCCu -3'
miRNA:   3'- -CCGCCu---GCUCCUguGGGAUCUcaAGG- -5'
27027 5' -54.9 NC_005832.1 + 3882 0.77 0.333837
Target:  5'- uGGUGGACGuagccGGACugUCUacagucGGAGUUCCg -3'
miRNA:   3'- -CCGCCUGCu----CCUGugGGA------UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 80670 0.76 0.402581
Target:  5'- cGGCGGuccucccgucuACGAGGACcccguccccuccaggGCCCUGGAGgggUUCa -3'
miRNA:   3'- -CCGCC-----------UGCUCCUG---------------UGGGAUCUCa--AGG- -5'
27027 5' -54.9 NC_005832.1 + 11764 0.75 0.453121
Target:  5'- aGGUcGACGAGGGCACCCUgcuGGAcgcuUUCCc -3'
miRNA:   3'- -CCGcCUGCUCCUGUGGGA---UCUc---AAGG- -5'
27027 5' -54.9 NC_005832.1 + 29889 0.74 0.471992
Target:  5'- cGGCGGugGAGGccaagaugagGCACacggcagccguCCUGGAG-UCCa -3'
miRNA:   3'- -CCGCCugCUCC----------UGUG-----------GGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 43269 0.73 0.520801
Target:  5'- cGGCGuGAC-AGGugACCCcgUGGGGUUCg -3'
miRNA:   3'- -CCGC-CUGcUCCugUGGG--AUCUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 59906 0.73 0.561211
Target:  5'- -cUGGAUGAGGAgGCUCUGGAGggCa -3'
miRNA:   3'- ccGCCUGCUCCUgUGGGAUCUCaaGg -5'
27027 5' -54.9 NC_005832.1 + 67562 0.72 0.612811
Target:  5'- --gGGACcAGGACcCCCggAGAGUUCCc -3'
miRNA:   3'- ccgCCUGcUCCUGuGGGa-UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 72530 0.72 0.612811
Target:  5'- gGGUGGAccCGGGGGucccuuguCGCCCUuuGGUUCCg -3'
miRNA:   3'- -CCGCCU--GCUCCU--------GUGGGAucUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 39247 0.72 0.623206
Target:  5'- uGGCGGAggcucgggauCGGGGACcgugaaCCUGGGGUcCCg -3'
miRNA:   3'- -CCGCCU----------GCUCCUGug----GGAUCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 1384 0.71 0.633608
Target:  5'- aGGagGGACagGAGGAUGCCCaGGAuGUUCCc -3'
miRNA:   3'- -CCg-CCUG--CUCCUGUGGGaUCU-CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 83429 0.71 0.6544
Target:  5'- gGGCcGGCGGGGACAUagaagagggCCUGGAGcUCUu -3'
miRNA:   3'- -CCGcCUGCUCCUGUG---------GGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 64110 0.71 0.6544
Target:  5'- cGGuCGGGcCGAGG-CugUCgugAGAGUUCCc -3'
miRNA:   3'- -CC-GCCU-GCUCCuGugGGa--UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 37547 0.71 0.664773
Target:  5'- gGGUGGGCGAGG---CCgUAGAGUUUg -3'
miRNA:   3'- -CCGCCUGCUCCuguGGgAUCUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 89668 0.71 0.664773
Target:  5'- aGGUGGACucgaaGGGGACgACCCUcacccuGUUCCa -3'
miRNA:   3'- -CCGCCUG-----CUCCUG-UGGGAucu---CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 79860 0.71 0.664773
Target:  5'- aGGaaGAUGAGGGCuCCCUcuggcaGGGGUUCUg -3'
miRNA:   3'- -CCgcCUGCUCCUGuGGGA------UCUCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.