miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 5' -54.9 NC_005832.1 + 540 0.8 0.239225
Target:  5'- cGGCGGGguccgcgucCGAGGACACCCUGcucacGAGcUCCc -3'
miRNA:   3'- -CCGCCU---------GCUCCUGUGGGAU-----CUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 1384 0.71 0.633608
Target:  5'- aGGagGGACagGAGGAUGCCCaGGAuGUUCCc -3'
miRNA:   3'- -CCg-CCUG--CUCCUGUGGGaUCU-CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 1490 0.66 0.916399
Target:  5'- cGGCGaGA--GGGGCACuCCUguaGGGGUUgCCg -3'
miRNA:   3'- -CCGC-CUgcUCCUGUG-GGA---UCUCAA-GG- -5'
27027 5' -54.9 NC_005832.1 + 3882 0.77 0.333837
Target:  5'- uGGUGGACGuagccGGACugUCUacagucGGAGUUCCg -3'
miRNA:   3'- -CCGCCUGCu----CCUGugGGA------UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 5400 0.7 0.7059
Target:  5'- cGGUGGugGGuccagacGGCACCCUGGAGg--- -3'
miRNA:   3'- -CCGCCugCUc------CUGUGGGAUCUCaagg -5'
27027 5' -54.9 NC_005832.1 + 5771 0.66 0.90354
Target:  5'- gGGCGucguACGAGGGucugguCACCCUgcccaggGGAGaUCCg -3'
miRNA:   3'- -CCGCc---UGCUCCU------GUGGGA-------UCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 5775 0.67 0.884038
Target:  5'- uGGUGGACGGGGAUcccgugGCCCUuaacAGGcaacCCa -3'
miRNA:   3'- -CCGCCUGCUCCUG------UGGGA----UCUcaa-GG- -5'
27027 5' -54.9 NC_005832.1 + 5917 0.68 0.820627
Target:  5'- cGgGGACGAGGGCAaCCUcuaccucccgcAGGGUcCCc -3'
miRNA:   3'- cCgCCUGCUCCUGUgGGA-----------UCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 6320 0.71 0.684399
Target:  5'- gGGUGGACggGAGGACAgaggacagaauguCCCUAGGcGUcgcUCCc -3'
miRNA:   3'- -CCGCCUG--CUCCUGU-------------GGGAUCU-CA---AGG- -5'
27027 5' -54.9 NC_005832.1 + 6494 0.7 0.7059
Target:  5'- cGGCGGAugaCGAGGACggggugucugugGCCCUGugcGGggCCa -3'
miRNA:   3'- -CCGCCU---GCUCCUG------------UGGGAUc--UCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 6865 0.66 0.904176
Target:  5'- gGGUGGuauguucCGAGucccACACCCUGGGGUagugggggaggcUCCu -3'
miRNA:   3'- -CCGCCu------GCUCc---UGUGGGAUCUCA------------AGG- -5'
27027 5' -54.9 NC_005832.1 + 7855 0.68 0.820627
Target:  5'- uGGCGGugacaaaGGGGACcaaCCUGGGagcGUUCCu -3'
miRNA:   3'- -CCGCCug-----CUCCUGug-GGAUCU---CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 8127 0.78 0.311459
Target:  5'- gGGCGGccuuCGAGGAguCCCUAGAuaUCCu -3'
miRNA:   3'- -CCGCCu---GCUCCUguGGGAUCUcaAGG- -5'
27027 5' -54.9 NC_005832.1 + 9325 0.66 0.890987
Target:  5'- uGGCc-GCGAGGA-ACUCUAGGGUgUCCu -3'
miRNA:   3'- -CCGccUGCUCCUgUGGGAUCUCA-AGG- -5'
27027 5' -54.9 NC_005832.1 + 9466 1.14 0.001304
Target:  5'- cGGCGGACGAGGACACCCUAGAGUUCCu -3'
miRNA:   3'- -CCGCCUGCUCCUGUGGGAUCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 10191 0.66 0.916399
Target:  5'- aGGCGGugGAGaGgAUCCUcauGAcUUCCg -3'
miRNA:   3'- -CCGCCugCUCcUgUGGGAu--CUcAAGG- -5'
27027 5' -54.9 NC_005832.1 + 11764 0.75 0.453121
Target:  5'- aGGUcGACGAGGGCACCCUgcuGGAcgcuUUCCc -3'
miRNA:   3'- -CCGcCUGCUCCUGUGGGA---UCUc---AAGG- -5'
27027 5' -54.9 NC_005832.1 + 11887 0.66 0.91041
Target:  5'- cGGCGG-UGAGGGCuccgucuCCCaUAGcGggCCg -3'
miRNA:   3'- -CCGCCuGCUCCUGu------GGG-AUCuCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 12924 0.67 0.861828
Target:  5'- aGuCGucCGAGGugACCCUGGuGUcCCu -3'
miRNA:   3'- cC-GCcuGCUCCugUGGGAUCuCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 13017 0.66 0.890987
Target:  5'- --aGGAgGucccuGGACGCCUUcGGGUUCCc -3'
miRNA:   3'- ccgCCUgCu----CCUGUGGGAuCUCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.