miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 5' -54.9 NC_005832.1 + 100695 0.67 0.869453
Target:  5'- uGGUGG-CaGAGGAaaaACCCaAGAGgaCCa -3'
miRNA:   3'- -CCGCCuG-CUCCUg--UGGGaUCUCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 96106 0.67 0.884038
Target:  5'- cGCGG-UGAGGuuCGCCCUggaacccuucaaGGAG-UCCa -3'
miRNA:   3'- cCGCCuGCUCCu-GUGGGA------------UCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 92549 0.67 0.884038
Target:  5'- aGGaCGcGACGGGGACGgCUCUGGGcugCCu -3'
miRNA:   3'- -CC-GC-CUGCUCCUGU-GGGAUCUcaaGG- -5'
27027 5' -54.9 NC_005832.1 + 91969 0.68 0.837694
Target:  5'- cGGUGG-CGAGGugGgCCaGGAGcagCCu -3'
miRNA:   3'- -CCGCCuGCUCCugUgGGaUCUCaa-GG- -5'
27027 5' -54.9 NC_005832.1 + 89668 0.71 0.664773
Target:  5'- aGGUGGACucgaaGGGGACgACCCUcacccuGUUCCa -3'
miRNA:   3'- -CCGCCUG-----CUCCUG-UGGGAucu---CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 86934 0.67 0.861828
Target:  5'- cGGUGGGguUGAGGA-GCCCgugAGGGUaCCc -3'
miRNA:   3'- -CCGCCU--GCUCCUgUGGGa--UCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 84765 0.66 0.916399
Target:  5'- cGUGGAcCGuGGACGCCaaaggggUAGAGgaCCu -3'
miRNA:   3'- cCGCCU-GCuCCUGUGGg------AUCUCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 83429 0.71 0.6544
Target:  5'- gGGCcGGCGGGGACAUagaagagggCCUGGAGcUCUu -3'
miRNA:   3'- -CCGcCUGCUCCUGUG---------GGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 80670 0.76 0.402581
Target:  5'- cGGCGGuccucccgucuACGAGGACcccguccccuccaggGCCCUGGAGgggUUCa -3'
miRNA:   3'- -CCGCC-----------UGCUCCUG---------------UGGGAUCUCa--AGG- -5'
27027 5' -54.9 NC_005832.1 + 79860 0.71 0.664773
Target:  5'- aGGaaGAUGAGGGCuCCCUcuggcaGGGGUUCUg -3'
miRNA:   3'- -CCgcCUGCUCCUGuGGGA------UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 72793 0.67 0.85715
Target:  5'- aGGUGGACGucGACccacuuuacaacauuAgCCUGGGGUaCCa -3'
miRNA:   3'- -CCGCCUGCucCUG---------------UgGGAUCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 72567 0.66 0.91041
Target:  5'- uGgGGACGuGGGGC-CCCUGGGcUUCa -3'
miRNA:   3'- cCgCCUGC-UCCUGuGGGAUCUcAAGg -5'
27027 5' -54.9 NC_005832.1 + 72530 0.72 0.612811
Target:  5'- gGGUGGAccCGGGGGucccuuguCGCCCUuuGGUUCCg -3'
miRNA:   3'- -CCGCCU--GCUCCU--------GUGGGAucUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 72252 0.79 0.251233
Target:  5'- gGGUGGugGAaaaGGACgaagucGCCCUAGAGUuUCCa -3'
miRNA:   3'- -CCGCCugCU---CCUG------UGGGAUCUCA-AGG- -5'
27027 5' -54.9 NC_005832.1 + 67597 0.66 0.91041
Target:  5'- uGCGGGC-AGGG-ACCCgGGAGacUUCCa -3'
miRNA:   3'- cCGCCUGcUCCUgUGGGaUCUC--AAGG- -5'
27027 5' -54.9 NC_005832.1 + 67562 0.72 0.612811
Target:  5'- --gGGACcAGGACcCCCggAGAGUUCCc -3'
miRNA:   3'- ccgCCUGcUCCUGuGGGa-UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 67067 0.7 0.704882
Target:  5'- aGGCcugaccuGGACGccGAgGCCCUGGAGgccacUCCg -3'
miRNA:   3'- -CCG-------CCUGCucCUgUGGGAUCUCa----AGG- -5'
27027 5' -54.9 NC_005832.1 + 65759 0.7 0.695692
Target:  5'- uGGCGGACGuGGGCAUcaccaaguggaaCCU-GAGgcCCa -3'
miRNA:   3'- -CCGCCUGCuCCUGUG------------GGAuCUCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 64110 0.71 0.6544
Target:  5'- cGGuCGGGcCGAGG-CugUCgugAGAGUUCCc -3'
miRNA:   3'- -CC-GCCU-GCUCCuGugGGa--UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 60270 0.67 0.871698
Target:  5'- uGCGGAucggcgcUGAGGGaagcgcuggggucucUGCCCgAGGGUUCCa -3'
miRNA:   3'- cCGCCU-------GCUCCU---------------GUGGGaUCUCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.