miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 5' -54.9 NC_005832.1 + 19652 0.68 0.829253
Target:  5'- cGGCGGGUG-GGAgACCCgcagcGGGUUCg -3'
miRNA:   3'- -CCGCCUGCuCCUgUGGGau---CUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 5400 0.7 0.7059
Target:  5'- cGGUGGugGGuccagacGGCACCCUGGAGg--- -3'
miRNA:   3'- -CCGCCugCUc------CUGUGGGAUCUCaagg -5'
27027 5' -54.9 NC_005832.1 + 6494 0.7 0.7059
Target:  5'- cGGCGGAugaCGAGGACggggugucugugGCCCUGugcGGggCCa -3'
miRNA:   3'- -CCGCCU---GCUCCUG------------UGGGAUc--UCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 54716 0.7 0.716045
Target:  5'- aGGUggGGACGGGGuucgACGCCUgcgAGAGgaCCg -3'
miRNA:   3'- -CCG--CCUGCUCC----UGUGGGa--UCUCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 17749 0.69 0.745995
Target:  5'- uGCGGA-GGGGGCugggGCUCUGGGGUUUUg -3'
miRNA:   3'- cCGCCUgCUCCUG----UGGGAUCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 19797 0.69 0.775018
Target:  5'- cGUGGACGAGGcCGCCaaAGAGgcggaaaagaUCCu -3'
miRNA:   3'- cCGCCUGCUCCuGUGGgaUCUCa---------AGG- -5'
27027 5' -54.9 NC_005832.1 + 7855 0.68 0.820627
Target:  5'- uGGCGGugacaaaGGGGACcaaCCUGGGagcGUUCCu -3'
miRNA:   3'- -CCGCCug-----CUCCUGug-GGAUCU---CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 5917 0.68 0.820627
Target:  5'- cGgGGACGAGGGCAaCCUcuaccucccgcAGGGUcCCc -3'
miRNA:   3'- cCgCCUGCUCCUGUgGGA-----------UCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 20359 0.68 0.829253
Target:  5'- uGGCGGGuuacagcauCaAGGGCACCgUccucccagAGGGUUCCa -3'
miRNA:   3'- -CCGCCU---------GcUCCUGUGGgA--------UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 67067 0.7 0.704882
Target:  5'- aGGCcugaccuGGACGccGAgGCCCUGGAGgccacUCCg -3'
miRNA:   3'- -CCG-------CCUGCucCUgUGGGAUCUCa----AGG- -5'
27027 5' -54.9 NC_005832.1 + 65759 0.7 0.695692
Target:  5'- uGGCGGACGuGGGCAUcaccaaguggaaCCU-GAGgcCCa -3'
miRNA:   3'- -CCGCCUGCuCCUGUG------------GGAuCUCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 22729 0.71 0.685428
Target:  5'- cGGCGGG-GAGGAUuuGCCCcu--GUUCCa -3'
miRNA:   3'- -CCGCCUgCUCCUG--UGGGaucuCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 8127 0.78 0.311459
Target:  5'- gGGCGGccuuCGAGGAguCCCUAGAuaUCCu -3'
miRNA:   3'- -CCGCCu---GCUCCUguGGGAUCUcaAGG- -5'
27027 5' -54.9 NC_005832.1 + 80670 0.76 0.402581
Target:  5'- cGGCGGuccucccgucuACGAGGACcccguccccuccaggGCCCUGGAGgggUUCa -3'
miRNA:   3'- -CCGCC-----------UGCUCCUG---------------UGGGAUCUCa--AGG- -5'
27027 5' -54.9 NC_005832.1 + 43269 0.73 0.520801
Target:  5'- cGGCGuGAC-AGGugACCCcgUGGGGUUCg -3'
miRNA:   3'- -CCGC-CUGcUCCugUGGG--AUCUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 59906 0.73 0.561211
Target:  5'- -cUGGAUGAGGAgGCUCUGGAGggCa -3'
miRNA:   3'- ccGCCUGCUCCUgUGGGAUCUCaaGg -5'
27027 5' -54.9 NC_005832.1 + 67562 0.72 0.612811
Target:  5'- --gGGACcAGGACcCCCggAGAGUUCCc -3'
miRNA:   3'- ccgCCUGcUCCUGuGGGa-UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 64110 0.71 0.6544
Target:  5'- cGGuCGGGcCGAGG-CugUCgugAGAGUUCCc -3'
miRNA:   3'- -CC-GCCU-GCUCCuGugGGa--UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 89668 0.71 0.664773
Target:  5'- aGGUGGACucgaaGGGGACgACCCUcacccuGUUCCa -3'
miRNA:   3'- -CCGCCUG-----CUCCUG-UGGGAucu---CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 27864 0.71 0.685428
Target:  5'- aGGCGGcCGGGcAgGCCCUGGAccUCCu -3'
miRNA:   3'- -CCGCCuGCUCcUgUGGGAUCUcaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.