miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 5' -54.9 NC_005832.1 + 43269 0.73 0.520801
Target:  5'- cGGCGuGAC-AGGugACCCcgUGGGGUUCg -3'
miRNA:   3'- -CCGC-CUGcUCCugUGGG--AUCUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 59906 0.73 0.561211
Target:  5'- -cUGGAUGAGGAgGCUCUGGAGggCa -3'
miRNA:   3'- ccGCCUGCUCCUgUGGGAUCUCaaGg -5'
27027 5' -54.9 NC_005832.1 + 67562 0.72 0.612811
Target:  5'- --gGGACcAGGACcCCCggAGAGUUCCc -3'
miRNA:   3'- ccgCCUGcUCCUGuGGGa-UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 64110 0.71 0.6544
Target:  5'- cGGuCGGGcCGAGG-CugUCgugAGAGUUCCc -3'
miRNA:   3'- -CC-GCCU-GCUCCuGugGGa--UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 89668 0.71 0.664773
Target:  5'- aGGUGGACucgaaGGGGACgACCCUcacccuGUUCCa -3'
miRNA:   3'- -CCGCCUG-----CUCCUG-UGGGAucu---CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 27864 0.71 0.685428
Target:  5'- aGGCGGcCGGGcAgGCCCUGGAccUCCu -3'
miRNA:   3'- -CCGCCuGCUCcUgUGGGAUCUcaAGG- -5'
27027 5' -54.9 NC_005832.1 + 54716 0.7 0.716045
Target:  5'- aGGUggGGACGGGGuucgACGCCUgcgAGAGgaCCg -3'
miRNA:   3'- -CCG--CCUGCUCC----UGUGGGa--UCUCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 6494 0.7 0.7059
Target:  5'- cGGCGGAugaCGAGGACggggugucugugGCCCUGugcGGggCCa -3'
miRNA:   3'- -CCGCCU---GCUCCUG------------UGGGAUc--UCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 5400 0.7 0.7059
Target:  5'- cGGUGGugGGuccagacGGCACCCUGGAGg--- -3'
miRNA:   3'- -CCGCCugCUc------CUGUGGGAUCUCaagg -5'
27027 5' -54.9 NC_005832.1 + 67067 0.7 0.704882
Target:  5'- aGGCcugaccuGGACGccGAgGCCCUGGAGgccacUCCg -3'
miRNA:   3'- -CCG-------CCUGCucCUgUGGGAUCUCa----AGG- -5'
27027 5' -54.9 NC_005832.1 + 65759 0.7 0.695692
Target:  5'- uGGCGGACGuGGGCAUcaccaaguggaaCCU-GAGgcCCa -3'
miRNA:   3'- -CCGCCUGCuCCUGUG------------GGAuCUCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 22729 0.71 0.685428
Target:  5'- cGGCGGG-GAGGAUuuGCCCcu--GUUCCa -3'
miRNA:   3'- -CCGCCUgCUCCUG--UGGGaucuCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 39247 0.72 0.623206
Target:  5'- uGGCGGAggcucgggauCGGGGACcgugaaCCUGGGGUcCCg -3'
miRNA:   3'- -CCGCCU----------GCUCCUGug----GGAUCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 72530 0.72 0.612811
Target:  5'- gGGUGGAccCGGGGGucccuuguCGCCCUuuGGUUCCg -3'
miRNA:   3'- -CCGCCU--GCUCCU--------GUGGGAucUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 29889 0.74 0.471992
Target:  5'- cGGCGGugGAGGccaagaugagGCACacggcagccguCCUGGAG-UCCa -3'
miRNA:   3'- -CCGCCugCUCC----------UGUG-----------GGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 11764 0.75 0.453121
Target:  5'- aGGUcGACGAGGGCACCCUgcuGGAcgcuUUCCc -3'
miRNA:   3'- -CCGcCUGCUCCUGUGGGA---UCUc---AAGG- -5'
27027 5' -54.9 NC_005832.1 + 3882 0.77 0.333837
Target:  5'- uGGUGGACGuagccGGACugUCUacagucGGAGUUCCg -3'
miRNA:   3'- -CCGCCUGCu----CCUGugGGA------UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 32244 0.79 0.27017
Target:  5'- aGGgGGGCGAGGcugacCGCCCUAGAGaacuggUCCc -3'
miRNA:   3'- -CCgCCUGCUCCu----GUGGGAUCUCa-----AGG- -5'
27027 5' -54.9 NC_005832.1 + 72252 0.79 0.251233
Target:  5'- gGGUGGugGAaaaGGACgaagucGCCCUAGAGUuUCCa -3'
miRNA:   3'- -CCGCCugCU---CCUG------UGGGAUCUCA-AGG- -5'
27027 5' -54.9 NC_005832.1 + 1490 0.66 0.916399
Target:  5'- cGGCGaGA--GGGGCACuCCUguaGGGGUUgCCg -3'
miRNA:   3'- -CCGC-CUgcUCCUGUG-GGA---UCUCAA-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.