miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 5' -54.9 NC_005832.1 + 13101 0.66 0.897701
Target:  5'- aGCcuuGAUGAGGGCGCCCUu---UUCCa -3'
miRNA:   3'- cCGc--CUGCUCCUGUGGGAucucAAGG- -5'
27027 5' -54.9 NC_005832.1 + 17749 0.69 0.745995
Target:  5'- uGCGGA-GGGGGCugggGCUCUGGGGUUUUg -3'
miRNA:   3'- cCGCCUgCUCCUG----UGGGAUCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 19652 0.68 0.829253
Target:  5'- cGGCGGGUG-GGAgACCCgcagcGGGUUCg -3'
miRNA:   3'- -CCGCCUGCuCCUgUGGGau---CUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 19797 0.69 0.775018
Target:  5'- cGUGGACGAGGcCGCCaaAGAGgcggaaaagaUCCu -3'
miRNA:   3'- cCGCCUGCUCCuGUGGgaUCUCa---------AGG- -5'
27027 5' -54.9 NC_005832.1 + 20359 0.68 0.829253
Target:  5'- uGGCGGGuuacagcauCaAGGGCACCgUccucccagAGGGUUCCa -3'
miRNA:   3'- -CCGCCU---------GcUCCUGUGGgA--------UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 22729 0.71 0.685428
Target:  5'- cGGCGGG-GAGGAUuuGCCCcu--GUUCCa -3'
miRNA:   3'- -CCGCCUgCUCCUG--UGGGaucuCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 25275 0.68 0.837694
Target:  5'- uGGCGGgAUGAGGGucguaACCCUccagGGAGaaaUCCu -3'
miRNA:   3'- -CCGCC-UGCUCCUg----UGGGA----UCUCa--AGG- -5'
27027 5' -54.9 NC_005832.1 + 27864 0.71 0.685428
Target:  5'- aGGCGGcCGGGcAgGCCCUGGAccUCCu -3'
miRNA:   3'- -CCGCCuGCUCcUgUGGGAUCUcaAGG- -5'
27027 5' -54.9 NC_005832.1 + 29889 0.74 0.471992
Target:  5'- cGGCGGugGAGGccaagaugagGCACacggcagccguCCUGGAG-UCCa -3'
miRNA:   3'- -CCGCCugCUCC----------UGUG-----------GGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 32244 0.79 0.27017
Target:  5'- aGGgGGGCGAGGcugacCGCCCUAGAGaacuggUCCc -3'
miRNA:   3'- -CCgCCUGCUCCu----GUGGGAUCUCa-----AGG- -5'
27027 5' -54.9 NC_005832.1 + 36206 0.69 0.765463
Target:  5'- gGGCGGuCGuGGuccaGCCCaGGAGcgUCCa -3'
miRNA:   3'- -CCGCCuGCuCCug--UGGGaUCUCa-AGG- -5'
27027 5' -54.9 NC_005832.1 + 37547 0.71 0.664773
Target:  5'- gGGUGGGCGAGG---CCgUAGAGUUUg -3'
miRNA:   3'- -CCGCCUGCUCCuguGGgAUCUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 39247 0.72 0.623206
Target:  5'- uGGCGGAggcucgggauCGGGGACcgugaaCCUGGGGUcCCg -3'
miRNA:   3'- -CCGCCU----------GCUCCUGug----GGAUCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 39424 0.69 0.755785
Target:  5'- aGGUGGACGuGGACuccgucugcGCCCgcgGGGccccuuuacgccGUUCCu -3'
miRNA:   3'- -CCGCCUGCuCCUG---------UGGGa--UCU------------CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 39798 0.66 0.918727
Target:  5'- cGGUGGguccaaccgguccuaGCG-GGGCGCCUggaucuUAGGGUUCg -3'
miRNA:   3'- -CCGCC---------------UGCuCCUGUGGG------AUCUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 40439 0.67 0.845941
Target:  5'- gGGacaGGcCGccGACAUCCUGGAG-UCCa -3'
miRNA:   3'- -CCg--CCuGCucCUGUGGGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 43269 0.73 0.520801
Target:  5'- cGGCGuGAC-AGGugACCCcgUGGGGUUCg -3'
miRNA:   3'- -CCGC-CUGcUCCugUGGG--AUCUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 50399 0.68 0.837694
Target:  5'- cGGCGGcagaGAGGugGCCCUcGAcg-CCc -3'
miRNA:   3'- -CCGCCug--CUCCugUGGGAuCUcaaGG- -5'
27027 5' -54.9 NC_005832.1 + 50668 0.67 0.845941
Target:  5'- aGGCGGGCGAGaGgAUCCUGacggaccugcucGAG-UCCg -3'
miRNA:   3'- -CCGCCUGCUCcUgUGGGAU------------CUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 52588 0.67 0.861828
Target:  5'- cGGCcGACGuGaGAacccuCACCCUGGGG-UCCu -3'
miRNA:   3'- -CCGcCUGCuC-CU-----GUGGGAUCUCaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.