miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 5' -54.9 NC_005832.1 + 9466 1.14 0.001304
Target:  5'- cGGCGGACGAGGACACCCUAGAGUUCCu -3'
miRNA:   3'- -CCGCCUGCUCCUGUGGGAUCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 50668 0.67 0.845941
Target:  5'- aGGCGGGCGAGaGgAUCCUGacggaccugcucGAG-UCCg -3'
miRNA:   3'- -CCGCCUGCUCcUgUGGGAU------------CUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 54241 0.67 0.853988
Target:  5'- aGGgGGAgCGccGGAUguaaagACCCUAGAG-UCCg -3'
miRNA:   3'- -CCgCCU-GCu-CCUG------UGGGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 1490 0.66 0.916399
Target:  5'- cGGCGaGA--GGGGCACuCCUguaGGGGUUgCCg -3'
miRNA:   3'- -CCGC-CUgcUCCUGUG-GGA---UCUCAA-GG- -5'
27027 5' -54.9 NC_005832.1 + 11764 0.75 0.453121
Target:  5'- aGGUcGACGAGGGCACCCUgcuGGAcgcuUUCCc -3'
miRNA:   3'- -CCGcCUGCUCCUGUGGGA---UCUc---AAGG- -5'
27027 5' -54.9 NC_005832.1 + 29889 0.74 0.471992
Target:  5'- cGGCGGugGAGGccaagaugagGCACacggcagccguCCUGGAG-UCCa -3'
miRNA:   3'- -CCGCCugCUCC----------UGUG-----------GGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 39247 0.72 0.623206
Target:  5'- uGGCGGAggcucgggauCGGGGACcgugaaCCUGGGGUcCCg -3'
miRNA:   3'- -CCGCCU----------GCUCCUGug----GGAUCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 1384 0.71 0.633608
Target:  5'- aGGagGGACagGAGGAUGCCCaGGAuGUUCCc -3'
miRNA:   3'- -CCg-CCUG--CUCCUGUGGGaUCU-CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 37547 0.71 0.664773
Target:  5'- gGGUGGGCGAGG---CCgUAGAGUUUg -3'
miRNA:   3'- -CCGCCUGCUCCuguGGgAUCUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 50399 0.68 0.837694
Target:  5'- cGGCGGcagaGAGGugGCCCUcGAcg-CCc -3'
miRNA:   3'- -CCGCCug--CUCCugUGGGAuCUcaaGG- -5'
27027 5' -54.9 NC_005832.1 + 39424 0.69 0.755785
Target:  5'- aGGUGGACGuGGACuccgucugcGCCCgcgGGGccccuuuacgccGUUCCu -3'
miRNA:   3'- -CCGCCUGCuCCUG---------UGGGa--UCU------------CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 79860 0.71 0.664773
Target:  5'- aGGaaGAUGAGGGCuCCCUcuggcaGGGGUUCUg -3'
miRNA:   3'- -CCgcCUGCUCCUGuGGGA------UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 72252 0.79 0.251233
Target:  5'- gGGUGGugGAaaaGGACgaagucGCCCUAGAGUuUCCa -3'
miRNA:   3'- -CCGCCugCU---CCUG------UGGGAUCUCA-AGG- -5'
27027 5' -54.9 NC_005832.1 + 36206 0.69 0.765463
Target:  5'- gGGCGGuCGuGGuccaGCCCaGGAGcgUCCa -3'
miRNA:   3'- -CCGCCuGCuCCug--UGGGaUCUCa-AGG- -5'
27027 5' -54.9 NC_005832.1 + 32244 0.79 0.27017
Target:  5'- aGGgGGGCGAGGcugacCGCCCUAGAGaacuggUCCc -3'
miRNA:   3'- -CCgCCUGCUCCu----GUGGGAUCUCa-----AGG- -5'
27027 5' -54.9 NC_005832.1 + 83429 0.71 0.6544
Target:  5'- gGGCcGGCGGGGACAUagaagagggCCUGGAGcUCUu -3'
miRNA:   3'- -CCGcCUGCUCCUGUG---------GGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 91969 0.68 0.837694
Target:  5'- cGGUGG-CGAGGugGgCCaGGAGcagCCu -3'
miRNA:   3'- -CCGCCuGCUCCugUgGGaUCUCaa-GG- -5'
27027 5' -54.9 NC_005832.1 + 40439 0.67 0.845941
Target:  5'- gGGacaGGcCGccGACAUCCUGGAG-UCCa -3'
miRNA:   3'- -CCg--CCuGCucCUGUGGGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 3882 0.77 0.333837
Target:  5'- uGGUGGACGuagccGGACugUCUacagucGGAGUUCCg -3'
miRNA:   3'- -CCGCCUGCu----CCUGugGGA------UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 72530 0.72 0.612811
Target:  5'- gGGUGGAccCGGGGGucccuuguCGCCCUuuGGUUCCg -3'
miRNA:   3'- -CCGCCU--GCUCCU--------GUGGGAucUCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.