miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27027 5' -54.9 NC_005832.1 + 72793 0.67 0.85715
Target:  5'- aGGUGGACGucGACccacuuuacaacauuAgCCUGGGGUaCCa -3'
miRNA:   3'- -CCGCCUGCucCUG---------------UgGGAUCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 54241 0.67 0.853988
Target:  5'- aGGgGGAgCGccGGAUguaaagACCCUAGAG-UCCg -3'
miRNA:   3'- -CCgCCU-GCu-CCUG------UGGGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 40439 0.67 0.845941
Target:  5'- gGGacaGGcCGccGACAUCCUGGAG-UCCa -3'
miRNA:   3'- -CCg--CCuGCucCUGUGGGAUCUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 50668 0.67 0.845941
Target:  5'- aGGCGGGCGAGaGgAUCCUGacggaccugcucGAG-UCCg -3'
miRNA:   3'- -CCGCCUGCUCcUgUGGGAU------------CUCaAGG- -5'
27027 5' -54.9 NC_005832.1 + 25275 0.68 0.837694
Target:  5'- uGGCGGgAUGAGGGucguaACCCUccagGGAGaaaUCCu -3'
miRNA:   3'- -CCGCC-UGCUCCUg----UGGGA----UCUCa--AGG- -5'
27027 5' -54.9 NC_005832.1 + 91969 0.68 0.837694
Target:  5'- cGGUGG-CGAGGugGgCCaGGAGcagCCu -3'
miRNA:   3'- -CCGCCuGCUCCugUgGGaUCUCaa-GG- -5'
27027 5' -54.9 NC_005832.1 + 50399 0.68 0.837694
Target:  5'- cGGCGGcagaGAGGugGCCCUcGAcg-CCc -3'
miRNA:   3'- -CCGCCug--CUCCugUGGGAuCUcaaGG- -5'
27027 5' -54.9 NC_005832.1 + 19652 0.68 0.829253
Target:  5'- cGGCGGGUG-GGAgACCCgcagcGGGUUCg -3'
miRNA:   3'- -CCGCCUGCuCCUgUGGGau---CUCAAGg -5'
27027 5' -54.9 NC_005832.1 + 20359 0.68 0.829253
Target:  5'- uGGCGGGuuacagcauCaAGGGCACCgUccucccagAGGGUUCCa -3'
miRNA:   3'- -CCGCCU---------GcUCCUGUGGgA--------UCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 7855 0.68 0.820627
Target:  5'- uGGCGGugacaaaGGGGACcaaCCUGGGagcGUUCCu -3'
miRNA:   3'- -CCGCCug-----CUCCUGug-GGAUCU---CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 5917 0.68 0.820627
Target:  5'- cGgGGACGAGGGCAaCCUcuaccucccgcAGGGUcCCc -3'
miRNA:   3'- cCgCCUGCUCCUGUgGGA-----------UCUCAaGG- -5'
27027 5' -54.9 NC_005832.1 + 19797 0.69 0.775018
Target:  5'- cGUGGACGAGGcCGCCaaAGAGgcggaaaagaUCCu -3'
miRNA:   3'- cCGCCUGCUCCuGUGGgaUCUCa---------AGG- -5'
27027 5' -54.9 NC_005832.1 + 36206 0.69 0.765463
Target:  5'- gGGCGGuCGuGGuccaGCCCaGGAGcgUCCa -3'
miRNA:   3'- -CCGCCuGCuCCug--UGGGaUCUCa-AGG- -5'
27027 5' -54.9 NC_005832.1 + 39424 0.69 0.755785
Target:  5'- aGGUGGACGuGGACuccgucugcGCCCgcgGGGccccuuuacgccGUUCCu -3'
miRNA:   3'- -CCGCCUGCuCCUG---------UGGGa--UCU------------CAAGG- -5'
27027 5' -54.9 NC_005832.1 + 17749 0.69 0.745995
Target:  5'- uGCGGA-GGGGGCugggGCUCUGGGGUUUUg -3'
miRNA:   3'- cCGCCUgCUCCUG----UGGGAUCUCAAGG- -5'
27027 5' -54.9 NC_005832.1 + 54716 0.7 0.716045
Target:  5'- aGGUggGGACGGGGuucgACGCCUgcgAGAGgaCCg -3'
miRNA:   3'- -CCG--CCUGCUCC----UGUGGGa--UCUCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 5400 0.7 0.7059
Target:  5'- cGGUGGugGGuccagacGGCACCCUGGAGg--- -3'
miRNA:   3'- -CCGCCugCUc------CUGUGGGAUCUCaagg -5'
27027 5' -54.9 NC_005832.1 + 6494 0.7 0.7059
Target:  5'- cGGCGGAugaCGAGGACggggugucugugGCCCUGugcGGggCCa -3'
miRNA:   3'- -CCGCCU---GCUCCUG------------UGGGAUc--UCaaGG- -5'
27027 5' -54.9 NC_005832.1 + 67067 0.7 0.704882
Target:  5'- aGGCcugaccuGGACGccGAgGCCCUGGAGgccacUCCg -3'
miRNA:   3'- -CCG-------CCUGCucCUgUGGGAUCUCa----AGG- -5'
27027 5' -54.9 NC_005832.1 + 65759 0.7 0.695692
Target:  5'- uGGCGGACGuGGGCAUcaccaaguggaaCCU-GAGgcCCa -3'
miRNA:   3'- -CCGCCUGCuCCUGUG------------GGAuCUCaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.