miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27028 5' -56.5 NC_005832.1 + 43351 0.66 0.859242
Target:  5'- -aGAC-GC-GGACCCcgCAGCGCCGg- -3'
miRNA:   3'- ggCUGcCGuUCUGGGa-GUUGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 78577 0.66 0.851388
Target:  5'- -gGACGGCGuacgagauuguGGACUCUgCGGCGCCc-- -3'
miRNA:   3'- ggCUGCCGU-----------UCUGGGA-GUUGCGGcag -5'
27028 5' -56.5 NC_005832.1 + 9619 0.66 0.851388
Target:  5'- cCUGG-GGCAGGcuguCCCUCAG-GUCGUCu -3'
miRNA:   3'- -GGCUgCCGUUCu---GGGAGUUgCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 86521 0.66 0.851388
Target:  5'- gCGGCGGcCAAGaacgaaGCCUUgGGCGCCuUCu -3'
miRNA:   3'- gGCUGCC-GUUC------UGGGAgUUGCGGcAG- -5'
27028 5' -56.5 NC_005832.1 + 74455 0.66 0.843332
Target:  5'- cCUGACGGg-----CCUgGACGCCGUCa -3'
miRNA:   3'- -GGCUGCCguucugGGAgUUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 9102 0.66 0.843332
Target:  5'- gCGugGGguauaAAGuCCCUCc-UGCCGUCa -3'
miRNA:   3'- gGCugCCg----UUCuGGGAGuuGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 39410 0.66 0.843332
Target:  5'- uCCGucuGCGcccGCGGGGcCCCUUuACGCCGUUc -3'
miRNA:   3'- -GGC---UGC---CGUUCU-GGGAGuUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 72796 0.66 0.843332
Target:  5'- -gGACcaaCGGGACCCUUuGgGCCGUCg -3'
miRNA:   3'- ggCUGcc-GUUCUGGGAGuUgCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 12011 0.66 0.835081
Target:  5'- -aGACGGa---GCCCUCAcCGCCGa- -3'
miRNA:   3'- ggCUGCCguucUGGGAGUuGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 72962 0.66 0.826642
Target:  5'- cCCGACGGacccCAGGGUCCUCGGgGCCc-- -3'
miRNA:   3'- -GGCUGCC----GUUCUGGGAGUUgCGGcag -5'
27028 5' -56.5 NC_005832.1 + 74751 0.66 0.826642
Target:  5'- cCCGcuauaACGGCGAgggaagcgguGACCCUCuuuaGCuCGUCg -3'
miRNA:   3'- -GGC-----UGCCGUU----------CUGGGAGuug-CG-GCAG- -5'
27028 5' -56.5 NC_005832.1 + 98717 0.66 0.826642
Target:  5'- -aGGCaGGCAcaGGGCCgUgAACGCCGg- -3'
miRNA:   3'- ggCUG-CCGU--UCUGGgAgUUGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 2418 0.66 0.818023
Target:  5'- cCUGACGGCGuuggAGACggCCagCAACGCCa-- -3'
miRNA:   3'- -GGCUGCCGU----UCUG--GGa-GUUGCGGcag -5'
27028 5' -56.5 NC_005832.1 + 20494 0.66 0.818023
Target:  5'- -gGACGGU---GCCCUUGAUGCUGUa -3'
miRNA:   3'- ggCUGCCGuucUGGGAGUUGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 10191 0.67 0.809231
Target:  5'- -aGGCGGUggagAGGAUCCUCAugacuucCGCCGcCg -3'
miRNA:   3'- ggCUGCCG----UUCUGGGAGUu------GCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 12068 0.67 0.809231
Target:  5'- gCCGGCGGCAaacgcagaaGGAUCggUCAcguAgGCCGUCu -3'
miRNA:   3'- -GGCUGCCGU---------UCUGGg-AGU---UgCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 54480 0.67 0.809231
Target:  5'- cCCGcCGaaaAAGGCCCcCAGCGCCG-Cg -3'
miRNA:   3'- -GGCuGCcg-UUCUGGGaGUUGCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 90909 0.67 0.803877
Target:  5'- gCCGAgGGCGGGcCCCUCaggaggcuccuuacgAggcagcuggACGCCGUg -3'
miRNA:   3'- -GGCUgCCGUUCuGGGAG---------------U---------UGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 32316 0.67 0.800276
Target:  5'- uUGugGGCuccGGACCC-CA-UGCCGUg -3'
miRNA:   3'- gGCugCCGu--UCUGGGaGUuGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 29243 0.67 0.800276
Target:  5'- ----aGGCucacGACCgagCUCAACGCCGUCc -3'
miRNA:   3'- ggcugCCGuu--CUGG---GAGUUGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.