miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27028 5' -56.5 NC_005832.1 + 32316 0.67 0.800276
Target:  5'- uUGugGGCuccGGACCC-CA-UGCCGUg -3'
miRNA:   3'- gGCugCCGu--UCUGGGaGUuGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 7074 0.67 0.791166
Target:  5'- cCCcAUGGCGu--CCCUCAcugUGCCGUCg -3'
miRNA:   3'- -GGcUGCCGUucuGGGAGUu--GCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 13440 0.67 0.772517
Target:  5'- aUGGcCGGCAAGACCau---CGCCGUg -3'
miRNA:   3'- gGCU-GCCGUUCUGGgaguuGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 1739 0.67 0.766819
Target:  5'- -aGACGGUggacaacugccuccaGcAGGCCCUCAuggccacaGCCGUCa -3'
miRNA:   3'- ggCUGCCG---------------U-UCUGGGAGUug------CGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 72796 0.66 0.843332
Target:  5'- -gGACcaaCGGGACCCUUuGgGCCGUCg -3'
miRNA:   3'- ggCUGcc-GUUCUGGGAGuUgCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 54480 0.67 0.809231
Target:  5'- cCCGcCGaaaAAGGCCCcCAGCGCCG-Cg -3'
miRNA:   3'- -GGCuGCcg-UUCUGGGaGUUGCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 33155 0.67 0.791166
Target:  5'- gCCGAcaCGGUGugguGACCUccUAugGCCGUCg -3'
miRNA:   3'- -GGCU--GCCGUu---CUGGGa-GUugCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 1237 0.68 0.74361
Target:  5'- gCCGGCugGGCcaccAGGCCC--GACGCCGUg -3'
miRNA:   3'- -GGCUG--CCGu---UCUGGGagUUGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 12068 0.67 0.809231
Target:  5'- gCCGGCGGCAaacgcagaaGGAUCggUCAcguAgGCCGUCu -3'
miRNA:   3'- -GGCUGCCGU---------UCUGGg-AGU---UgCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 95814 0.68 0.74361
Target:  5'- -gGAgGGCAcguguucaGGGCCCUCGagagggaguGCGCCGa- -3'
miRNA:   3'- ggCUgCCGU--------UCUGGGAGU---------UGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 94211 0.67 0.791166
Target:  5'- cUCGACGGUucGGGCCUcaaguacaUCAGgGCCGcCa -3'
miRNA:   3'- -GGCUGCCGu-UCUGGG--------AGUUgCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 29243 0.67 0.800276
Target:  5'- ----aGGCucacGACCgagCUCAACGCCGUCc -3'
miRNA:   3'- ggcugCCGuu--CUGG---GAGUUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 45965 0.67 0.791166
Target:  5'- aCCGACGG-GGGuCCagaguaCAugGCCGUCc -3'
miRNA:   3'- -GGCUGCCgUUCuGGga----GUugCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 50937 0.67 0.78191
Target:  5'- aCGACGGUAGGACUggaUCGGC-CgGUCc -3'
miRNA:   3'- gGCUGCCGUUCUGGg--AGUUGcGgCAG- -5'
27028 5' -56.5 NC_005832.1 + 104231 0.67 0.772517
Target:  5'- aCG-CGGCc--ACCCUgccccaguuuaCAACGCCGUCu -3'
miRNA:   3'- gGCuGCCGuucUGGGA-----------GUUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 58363 0.67 0.772517
Target:  5'- gUCGAUGGaauuuGGACCCUUGAgaCCGUCg -3'
miRNA:   3'- -GGCUGCCgu---UCUGGGAGUUgcGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 43351 0.66 0.859242
Target:  5'- -aGAC-GC-GGACCCcgCAGCGCCGg- -3'
miRNA:   3'- ggCUGcCGuUCUGGGa-GUUGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 39410 0.66 0.843332
Target:  5'- uCCGucuGCGcccGCGGGGcCCCUUuACGCCGUUc -3'
miRNA:   3'- -GGC---UGC---CGUUCU-GGGAGuUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 74751 0.66 0.826642
Target:  5'- cCCGcuauaACGGCGAgggaagcgguGACCCUCuuuaGCuCGUCg -3'
miRNA:   3'- -GGC-----UGCCGUU----------CUGGGAGuug-CG-GCAG- -5'
27028 5' -56.5 NC_005832.1 + 20494 0.66 0.818023
Target:  5'- -gGACGGU---GCCCUUGAUGCUGUa -3'
miRNA:   3'- ggCUGCCGuucUGGGAGUUGCGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.