miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27028 5' -56.5 NC_005832.1 + 104231 0.67 0.772517
Target:  5'- aCG-CGGCc--ACCCUgccccaguuuaCAACGCCGUCu -3'
miRNA:   3'- gGCuGCCGuucUGGGA-----------GUUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 104103 0.69 0.683368
Target:  5'- uCCG-CGGC--GGCCCUCAGgGCCa-- -3'
miRNA:   3'- -GGCuGCCGuuCUGGGAGUUgCGGcag -5'
27028 5' -56.5 NC_005832.1 + 98717 0.66 0.826642
Target:  5'- -aGGCaGGCAcaGGGCCgUgAACGCCGg- -3'
miRNA:   3'- ggCUG-CCGU--UCUGGgAgUUGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 97069 0.69 0.65254
Target:  5'- cUCGGaGGCAAGGCCCagGAgGCCcuGUCg -3'
miRNA:   3'- -GGCUgCCGUUCUGGGagUUgCGG--CAG- -5'
27028 5' -56.5 NC_005832.1 + 96747 0.74 0.407786
Target:  5'- -aGACGGC-AGACUCUC-ACGgCGUCa -3'
miRNA:   3'- ggCUGCCGuUCUGGGAGuUGCgGCAG- -5'
27028 5' -56.5 NC_005832.1 + 95842 0.78 0.240146
Target:  5'- gCCGcaGCGGgaAAGACUCUCGccGCGCCGUCa -3'
miRNA:   3'- -GGC--UGCCg-UUCUGGGAGU--UGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 95814 0.68 0.74361
Target:  5'- -gGAgGGCAcguguucaGGGCCCUCGagagggaguGCGCCGa- -3'
miRNA:   3'- ggCUgCCGU--------UCUGGGAGU---------UGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 94565 0.68 0.752387
Target:  5'- gCCcACGGCGGguuuaacGAgCCUCAccACGCCGUa -3'
miRNA:   3'- -GGcUGCCGUU-------CUgGGAGU--UGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 94211 0.67 0.791166
Target:  5'- cUCGACGGUucGGGCCUcaaguacaUCAGgGCCGcCa -3'
miRNA:   3'- -GGCUGCCGu-UCUGGG--------AGUUgCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 93768 0.72 0.480995
Target:  5'- aCGGCGGCAaacccGGcucacACCCUCcACGCCGg- -3'
miRNA:   3'- gGCUGCCGU-----UC-----UGGGAGuUGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 90909 0.67 0.803877
Target:  5'- gCCGAgGGCGGGcCCCUCaggaggcuccuuacgAggcagcuggACGCCGUg -3'
miRNA:   3'- -GGCUgCCGUUCuGGGAG---------------U---------UGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 86521 0.66 0.851388
Target:  5'- gCGGCGGcCAAGaacgaaGCCUUgGGCGCCuUCu -3'
miRNA:   3'- gGCUGCC-GUUC------UGGGAgUUGCGGcAG- -5'
27028 5' -56.5 NC_005832.1 + 78577 0.66 0.851388
Target:  5'- -gGACGGCGuacgagauuguGGACUCUgCGGCGCCc-- -3'
miRNA:   3'- ggCUGCCGU-----------UCUGGGA-GUUGCGGcag -5'
27028 5' -56.5 NC_005832.1 + 75182 0.72 0.490599
Target:  5'- aCGuAUGGUcgacGAGACCCUCGAUGgUGUCg -3'
miRNA:   3'- gGC-UGCCG----UUCUGGGAGUUGCgGCAG- -5'
27028 5' -56.5 NC_005832.1 + 74751 0.66 0.826642
Target:  5'- cCCGcuauaACGGCGAgggaagcgguGACCCUCuuuaGCuCGUCg -3'
miRNA:   3'- -GGC-----UGCCGUU----------CUGGGAGuug-CG-GCAG- -5'
27028 5' -56.5 NC_005832.1 + 74455 0.66 0.843332
Target:  5'- cCUGACGGg-----CCUgGACGCCGUCa -3'
miRNA:   3'- -GGCUGCCguucugGGAgUUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 72962 0.66 0.826642
Target:  5'- cCCGACGGacccCAGGGUCCUCGGgGCCc-- -3'
miRNA:   3'- -GGCUGCC----GUUCUGGGAGUUgCGGcag -5'
27028 5' -56.5 NC_005832.1 + 72796 0.66 0.843332
Target:  5'- -gGACcaaCGGGACCCUUuGgGCCGUCg -3'
miRNA:   3'- ggCUGcc-GUUCUGGGAGuUgCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 72745 0.7 0.600936
Target:  5'- gCGACucCAuucGGACCCUUcACGCCGUCc -3'
miRNA:   3'- gGCUGccGU---UCUGGGAGuUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 65466 0.72 0.490599
Target:  5'- aCCGugGGCGagaggGGGCCCUC-ACGuccCCGUg -3'
miRNA:   3'- -GGCugCCGU-----UCUGGGAGuUGC---GGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.