miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27030 5' -57.5 NC_005832.1 + 11166 1.12 0.000786
Target:  5'- aUGCUCCUAACGGGCACCCCCAUGACCa -3'
miRNA:   3'- -ACGAGGAUUGCCCGUGGGGGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 96294 0.78 0.199234
Target:  5'- cGCUCUUGACGGcCACCCUgGUGGCa -3'
miRNA:   3'- aCGAGGAUUGCCcGUGGGGgUACUGg -5'
27030 5' -57.5 NC_005832.1 + 33070 0.77 0.20431
Target:  5'- aGUUCCUGAUGGGCcucGCUCCCGcUGACa -3'
miRNA:   3'- aCGAGGAUUGCCCG---UGGGGGU-ACUGg -5'
27030 5' -57.5 NC_005832.1 + 9714 0.77 0.220214
Target:  5'- aGCUCCUGACGGuGU-CUCCCGUggaGACCa -3'
miRNA:   3'- aCGAGGAUUGCC-CGuGGGGGUA---CUGG- -5'
27030 5' -57.5 NC_005832.1 + 56424 0.73 0.362296
Target:  5'- -aCUCCc-ACGGgaGCGCCCaCCAUGACCa -3'
miRNA:   3'- acGAGGauUGCC--CGUGGG-GGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 80049 0.73 0.378737
Target:  5'- aGCUCCU-GCGcGCagGCCCCCAUcGCCg -3'
miRNA:   3'- aCGAGGAuUGCcCG--UGGGGGUAcUGG- -5'
27030 5' -57.5 NC_005832.1 + 102237 0.72 0.419293
Target:  5'- cGCUCUUGGCGuccauggcugccucGGCgGCCUCCAUGGCg -3'
miRNA:   3'- aCGAGGAUUGC--------------CCG-UGGGGGUACUGg -5'
27030 5' -57.5 NC_005832.1 + 36645 0.72 0.42197
Target:  5'- gGC-CCUGGCGuacGcCGCCUCCGUGGCCg -3'
miRNA:   3'- aCGaGGAUUGCc--C-GUGGGGGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 40346 0.72 0.430968
Target:  5'- gUGCUCCcuauuuGCGGGCGCCauagCCCGgcagGACg -3'
miRNA:   3'- -ACGAGGau----UGCCCGUGG----GGGUa---CUGg -5'
27030 5' -57.5 NC_005832.1 + 11897 0.72 0.440076
Target:  5'- gGCUCCgucucccaUAGCGGGCcgcaagacgGCCUaCGUGACCg -3'
miRNA:   3'- aCGAGG--------AUUGCCCG---------UGGGgGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 91282 0.71 0.458616
Target:  5'- aUGUUCCaGGCGGGCuuCCUCUGccUGGCCa -3'
miRNA:   3'- -ACGAGGaUUGCCCGu-GGGGGU--ACUGG- -5'
27030 5' -57.5 NC_005832.1 + 16597 0.71 0.468041
Target:  5'- cGCUCUUGAUGGGaucCACCgCCAgGGCUg -3'
miRNA:   3'- aCGAGGAUUGCCC---GUGGgGGUaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 90887 0.71 0.477565
Target:  5'- gGCUCCUuACGaGGCAgCUggacgCCGUGACUg -3'
miRNA:   3'- aCGAGGAuUGC-CCGUgGG-----GGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 11631 0.71 0.487183
Target:  5'- aGCgUCC-AGCaGGGUGCCCUCGUcGACCu -3'
miRNA:   3'- aCG-AGGaUUG-CCCGUGGGGGUA-CUGG- -5'
27030 5' -57.5 NC_005832.1 + 487 0.71 0.487183
Target:  5'- gGCgUCCUGGuCGGG-GCCCCUGUGgGCCg -3'
miRNA:   3'- aCG-AGGAUU-GCCCgUGGGGGUAC-UGG- -5'
27030 5' -57.5 NC_005832.1 + 90779 0.7 0.506687
Target:  5'- aGcCUCCUGAgGGGCccGCCCUC--GGCCg -3'
miRNA:   3'- aC-GAGGAUUgCCCG--UGGGGGuaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 95813 0.7 0.516563
Target:  5'- cUGC-CCUGgccGCGGcCGCUCCCuUGACCg -3'
miRNA:   3'- -ACGaGGAU---UGCCcGUGGGGGuACUGG- -5'
27030 5' -57.5 NC_005832.1 + 95656 0.7 0.536539
Target:  5'- cGCUCCUccguaguCGGcGCACUCCCucucgagGGCCc -3'
miRNA:   3'- aCGAGGAuu-----GCC-CGUGGGGGua-----CUGG- -5'
27030 5' -57.5 NC_005832.1 + 54163 0.7 0.540568
Target:  5'- -cCUCCUGuuuguuaggacgaggGCGGGCAgCCCCA--GCCu -3'
miRNA:   3'- acGAGGAU---------------UGCCCGUgGGGGUacUGG- -5'
27030 5' -57.5 NC_005832.1 + 10272 0.7 0.556778
Target:  5'- cUGUUCCcaggGGCaGGGaCACCCCCAgGuCCa -3'
miRNA:   3'- -ACGAGGa---UUG-CCC-GUGGGGGUaCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.