Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27030 | 5' | -57.5 | NC_005832.1 | + | 56424 | 0.73 | 0.362296 |
Target: 5'- -aCUCCc-ACGGgaGCGCCCaCCAUGACCa -3' miRNA: 3'- acGAGGauUGCC--CGUGGG-GGUACUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 16357 | 0.66 | 0.78926 |
Target: 5'- cGcCUCCU-GCGGcCGCCgCgGUGGCCu -3' miRNA: 3'- aC-GAGGAuUGCCcGUGGgGgUACUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 2507 | 0.66 | 0.760867 |
Target: 5'- cGCUCaCUuugUGGGaGCCCCCGacGGCCu -3' miRNA: 3'- aCGAG-GAuu-GCCCgUGGGGGUa-CUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 93699 | 0.66 | 0.760867 |
Target: 5'- gGuCUCCUcuGAUGGGauCCCCCAUGgAUCu -3' miRNA: 3'- aC-GAGGA--UUGCCCguGGGGGUAC-UGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 91770 | 0.66 | 0.751156 |
Target: 5'- cGCgcaccgCCUGACGGGCuuagucaagaccACCCCgCAgagGuCCc -3' miRNA: 3'- aCGa-----GGAUUGCCCG------------UGGGG-GUa--CuGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 95550 | 0.66 | 0.751156 |
Target: 5'- -aCUCUggacACGGGCuaGCCUCCGcGGCCg -3' miRNA: 3'- acGAGGau--UGCCCG--UGGGGGUaCUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 89837 | 0.67 | 0.701174 |
Target: 5'- aUGCUCUUGA-GGGUGCCCgCGuUGAUg -3' miRNA: 3'- -ACGAGGAUUgCCCGUGGGgGU-ACUGg -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 11819 | 0.67 | 0.69096 |
Target: 5'- gGCUCUggcCGGGC-UCCUCGUGAUg -3' miRNA: 3'- aCGAGGauuGCCCGuGGGGGUACUGg -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 44182 | 0.68 | 0.660053 |
Target: 5'- cGgUCCUggUGGGgaaggugucuCACUCCCuggGACCg -3' miRNA: 3'- aCgAGGAuuGCCC----------GUGGGGGua-CUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 43186 | 0.69 | 0.58752 |
Target: 5'- gGCUUCUuugaGGGCGCUCCCGccaGGCUg -3' miRNA: 3'- aCGAGGAuug-CCCGUGGGGGUa--CUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 95656 | 0.7 | 0.536539 |
Target: 5'- cGCUCCUccguaguCGGcGCACUCCCucucgagGGCCc -3' miRNA: 3'- aCGAGGAuu-----GCC-CGUGGGGGua-----CUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 11897 | 0.72 | 0.440076 |
Target: 5'- gGCUCCgucucccaUAGCGGGCcgcaagacgGCCUaCGUGACCg -3' miRNA: 3'- aCGAGG--------AUUGCCCG---------UGGGgGUACUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 91282 | 0.71 | 0.458616 |
Target: 5'- aUGUUCCaGGCGGGCuuCCUCUGccUGGCCa -3' miRNA: 3'- -ACGAGGaUUGCCCGu-GGGGGU--ACUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 16597 | 0.71 | 0.468041 |
Target: 5'- cGCUCUUGAUGGGaucCACCgCCAgGGCUg -3' miRNA: 3'- aCGAGGAUUGCCC---GUGGgGGUaCUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 487 | 0.71 | 0.487183 |
Target: 5'- gGCgUCCUGGuCGGG-GCCCCUGUGgGCCg -3' miRNA: 3'- aCG-AGGAUU-GCCCgUGGGGGUAC-UGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 11631 | 0.71 | 0.487183 |
Target: 5'- aGCgUCC-AGCaGGGUGCCCUCGUcGACCu -3' miRNA: 3'- aCG-AGGaUUG-CCCGUGGGGGUA-CUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 90779 | 0.7 | 0.506687 |
Target: 5'- aGcCUCCUGAgGGGCccGCCCUC--GGCCg -3' miRNA: 3'- aC-GAGGAUUgCCCG--UGGGGGuaCUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 95813 | 0.7 | 0.516563 |
Target: 5'- cUGC-CCUGgccGCGGcCGCUCCCuUGACCg -3' miRNA: 3'- -ACGaGGAU---UGCCcGUGGGGGuACUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 79849 | 0.66 | 0.789261 |
Target: 5'- gGCUCCcucUGGCagGGGUucuGCCUgUAUGACCc -3' miRNA: 3'- aCGAGG---AUUG--CCCG---UGGGgGUACUGG- -5' |
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27030 | 5' | -57.5 | NC_005832.1 | + | 96294 | 0.78 | 0.199234 |
Target: 5'- cGCUCUUGACGGcCACCCUgGUGGCa -3' miRNA: 3'- aCGAGGAUUGCCcGUGGGGgUACUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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