miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27030 5' -57.5 NC_005832.1 + 60248 0.69 0.61856
Target:  5'- aUGCaaccgUCCagGAUGGuGUACCugCCCAUGGCCa -3'
miRNA:   3'- -ACG-----AGGa-UUGCC-CGUGG--GGGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 13240 0.68 0.628938
Target:  5'- gGC-CCUGAUggaaaaGGGCGCCCUCAUcaaGGCUc -3'
miRNA:   3'- aCGaGGAUUG------CCCGUGGGGGUA---CUGG- -5'
27030 5' -57.5 NC_005832.1 + 12943 0.68 0.660054
Target:  5'- gGUUCa-GAUGGGCAUagcggacgCCCCAaUGACCa -3'
miRNA:   3'- aCGAGgaUUGCCCGUG--------GGGGU-ACUGG- -5'
27030 5' -57.5 NC_005832.1 + 56526 0.68 0.664192
Target:  5'- gGUUCCUGGCcGGCAggagggccauaggacCCCUCcUGGCCu -3'
miRNA:   3'- aCGAGGAUUGcCCGU---------------GGGGGuACUGG- -5'
27030 5' -57.5 NC_005832.1 + 72978 0.68 0.680696
Target:  5'- gGC-CCUGA-GGGCGCucagggCCCCA-GACCc -3'
miRNA:   3'- aCGaGGAUUgCCCGUG------GGGGUaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 81121 0.67 0.69096
Target:  5'- -aCUCUUGGacCGGGCAugUCCCguUGACCg -3'
miRNA:   3'- acGAGGAUU--GCCCGU--GGGGguACUGG- -5'
27030 5' -57.5 NC_005832.1 + 11465 0.67 0.69096
Target:  5'- aGCUCgUcuuuaacugcggGACGGGCGgcaaguacauCCCCgAUGGCUa -3'
miRNA:   3'- aCGAGgA------------UUGCCCGU----------GGGGgUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 89700 0.67 0.701174
Target:  5'- aGCUCgacaggCUGAC-GGC-CCCCC-UGGCCu -3'
miRNA:   3'- aCGAG------GAUUGcCCGuGGGGGuACUGG- -5'
27030 5' -57.5 NC_005832.1 + 104264 0.69 0.58752
Target:  5'- aGgUCCUGACGGuGUACCUgCAgaUGugCa -3'
miRNA:   3'- aCgAGGAUUGCC-CGUGGGgGU--ACugG- -5'
27030 5' -57.5 NC_005832.1 + 56561 0.69 0.577231
Target:  5'- cGUUCUggucaUggUGGGCGCUCCCGUGGg- -3'
miRNA:   3'- aCGAGG-----AuuGCCCGUGGGGGUACUgg -5'
27030 5' -57.5 NC_005832.1 + 10272 0.7 0.556778
Target:  5'- cUGUUCCcaggGGCaGGGaCACCCCCAgGuCCa -3'
miRNA:   3'- -ACGAGGa---UUG-CCC-GUGGGGGUaCuGG- -5'
27030 5' -57.5 NC_005832.1 + 96294 0.78 0.199234
Target:  5'- cGCUCUUGACGGcCACCCUgGUGGCa -3'
miRNA:   3'- aCGAGGAUUGCCcGUGGGGgUACUGg -5'
27030 5' -57.5 NC_005832.1 + 33070 0.77 0.20431
Target:  5'- aGUUCCUGAUGGGCcucGCUCCCGcUGACa -3'
miRNA:   3'- aCGAGGAUUGCCCG---UGGGGGU-ACUGg -5'
27030 5' -57.5 NC_005832.1 + 9714 0.77 0.220214
Target:  5'- aGCUCCUGACGGuGU-CUCCCGUggaGACCa -3'
miRNA:   3'- aCGAGGAUUGCC-CGuGGGGGUA---CUGG- -5'
27030 5' -57.5 NC_005832.1 + 80049 0.73 0.378737
Target:  5'- aGCUCCU-GCGcGCagGCCCCCAUcGCCg -3'
miRNA:   3'- aCGAGGAuUGCcCG--UGGGGGUAcUGG- -5'
27030 5' -57.5 NC_005832.1 + 102237 0.72 0.419293
Target:  5'- cGCUCUUGGCGuccauggcugccucGGCgGCCUCCAUGGCg -3'
miRNA:   3'- aCGAGGAUUGC--------------CCG-UGGGGGUACUGg -5'
27030 5' -57.5 NC_005832.1 + 36645 0.72 0.42197
Target:  5'- gGC-CCUGGCGuacGcCGCCUCCGUGGCCg -3'
miRNA:   3'- aCGaGGAUUGCc--C-GUGGGGGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 40346 0.72 0.430968
Target:  5'- gUGCUCCcuauuuGCGGGCGCCauagCCCGgcagGACg -3'
miRNA:   3'- -ACGAGGau----UGCCCGUGG----GGGUa---CUGg -5'
27030 5' -57.5 NC_005832.1 + 90887 0.71 0.477565
Target:  5'- gGCUCCUuACGaGGCAgCUggacgCCGUGACUg -3'
miRNA:   3'- aCGAGGAuUGC-CCGUgGG-----GGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 54163 0.7 0.540568
Target:  5'- -cCUCCUGuuuguuaggacgaggGCGGGCAgCCCCA--GCCu -3'
miRNA:   3'- acGAGGAU---------------UGCCCGUgGGGGUacUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.