miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27030 5' -57.5 NC_005832.1 + 40346 0.72 0.430968
Target:  5'- gUGCUCCcuauuuGCGGGCGCCauagCCCGgcagGACg -3'
miRNA:   3'- -ACGAGGau----UGCCCGUGG----GGGUa---CUGg -5'
27030 5' -57.5 NC_005832.1 + 41892 0.67 0.710316
Target:  5'- aGC-CCUugacgcuGACGGGUuucucccugGCCaCCAUGGCCg -3'
miRNA:   3'- aCGaGGA-------UUGCCCG---------UGGgGGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 43186 0.69 0.58752
Target:  5'- gGCUUCUuugaGGGCGCUCCCGccaGGCUg -3'
miRNA:   3'- aCGAGGAuug-CCCGUGGGGGUa--CUGG- -5'
27030 5' -57.5 NC_005832.1 + 43324 0.66 0.770462
Target:  5'- cGCcagCCUGGCGGgaGCGCCCUCAaagaaGCCc -3'
miRNA:   3'- aCGa--GGAUUGCC--CGUGGGGGUac---UGG- -5'
27030 5' -57.5 NC_005832.1 + 44182 0.68 0.660053
Target:  5'- cGgUCCUggUGGGgaaggugucuCACUCCCuggGACCg -3'
miRNA:   3'- aCgAGGAuuGCCC----------GUGGGGGua-CUGG- -5'
27030 5' -57.5 NC_005832.1 + 47729 0.69 0.58752
Target:  5'- aGCUcugCCUGACGGGCAUggcggCCgCGaGGCCg -3'
miRNA:   3'- aCGA---GGAUUGCCCGUG-----GGgGUaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 54163 0.7 0.540568
Target:  5'- -cCUCCUGuuuguuaggacgaggGCGGGCAgCCCCA--GCCu -3'
miRNA:   3'- acGAGGAU---------------UGCCCGUgGGGGUacUGG- -5'
27030 5' -57.5 NC_005832.1 + 56424 0.73 0.362296
Target:  5'- -aCUCCc-ACGGgaGCGCCCaCCAUGACCa -3'
miRNA:   3'- acGAGGauUGCC--CGUGGG-GGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 56526 0.68 0.664192
Target:  5'- gGUUCCUGGCcGGCAggagggccauaggacCCCUCcUGGCCu -3'
miRNA:   3'- aCGAGGAUUGcCCGU---------------GGGGGuACUGG- -5'
27030 5' -57.5 NC_005832.1 + 56561 0.69 0.577231
Target:  5'- cGUUCUggucaUggUGGGCGCUCCCGUGGg- -3'
miRNA:   3'- aCGAGG-----AuuGCCCGUGGGGGUACUgg -5'
27030 5' -57.5 NC_005832.1 + 60248 0.69 0.61856
Target:  5'- aUGCaaccgUCCagGAUGGuGUACCugCCCAUGGCCa -3'
miRNA:   3'- -ACG-----AGGa-UUGCC-CGUGG--GGGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 62246 0.66 0.751156
Target:  5'- gUGUgCCUAACuGGGacCGgCCCCGUGuCCa -3'
miRNA:   3'- -ACGaGGAUUG-CCC--GUgGGGGUACuGG- -5'
27030 5' -57.5 NC_005832.1 + 72978 0.68 0.680696
Target:  5'- gGC-CCUGA-GGGCGCucagggCCCCA-GACCc -3'
miRNA:   3'- aCGaGGAUUgCCCGUG------GGGGUaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 77349 0.67 0.711328
Target:  5'- cGCcgCCUuguccuCGGGCGCCUCCccGAUa -3'
miRNA:   3'- aCGa-GGAuu----GCCCGUGGGGGuaCUGg -5'
27030 5' -57.5 NC_005832.1 + 78544 0.67 0.721413
Target:  5'- aGCUCCUuGCGcaGGCcguccuuuACCCUgGUGACg -3'
miRNA:   3'- aCGAGGAuUGC--CCG--------UGGGGgUACUGg -5'
27030 5' -57.5 NC_005832.1 + 79849 0.66 0.789261
Target:  5'- gGCUCCcucUGGCagGGGUucuGCCUgUAUGACCc -3'
miRNA:   3'- aCGAGG---AUUG--CCCG---UGGGgGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 80049 0.73 0.378737
Target:  5'- aGCUCCU-GCGcGCagGCCCCCAUcGCCg -3'
miRNA:   3'- aCGAGGAuUGCcCG--UGGGGGUAcUGG- -5'
27030 5' -57.5 NC_005832.1 + 80327 0.66 0.760868
Target:  5'- cGUUCCUcACGGGU-CCCCUGgu-CCa -3'
miRNA:   3'- aCGAGGAuUGCCCGuGGGGGUacuGG- -5'
27030 5' -57.5 NC_005832.1 + 80926 0.66 0.77993
Target:  5'- aGCUCCUGACGGacucuuggguGCAcgaucCCUCCcUGAUg -3'
miRNA:   3'- aCGAGGAUUGCC----------CGU-----GGGGGuACUGg -5'
27030 5' -57.5 NC_005832.1 + 81121 0.67 0.69096
Target:  5'- -aCUCUUGGacCGGGCAugUCCCguUGACCg -3'
miRNA:   3'- acGAGGAUU--GCCCGU--GGGGguACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.