miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27030 5' -57.5 NC_005832.1 + 487 0.71 0.487183
Target:  5'- gGCgUCCUGGuCGGG-GCCCCUGUGgGCCg -3'
miRNA:   3'- aCG-AGGAUU-GCCCgUGGGGGUAC-UGG- -5'
27030 5' -57.5 NC_005832.1 + 2507 0.66 0.760867
Target:  5'- cGCUCaCUuugUGGGaGCCCCCGacGGCCu -3'
miRNA:   3'- aCGAG-GAuu-GCCCgUGGGGGUa-CUGG- -5'
27030 5' -57.5 NC_005832.1 + 5566 0.67 0.701174
Target:  5'- gGCUauggCUu-CGGGCACCCCCAccucGuCCa -3'
miRNA:   3'- aCGAg---GAuuGCCCGUGGGGGUa---CuGG- -5'
27030 5' -57.5 NC_005832.1 + 7458 0.66 0.77993
Target:  5'- gGCUCCUaugGACuGGGCGCacaggacaCCCAcaGCCu -3'
miRNA:   3'- aCGAGGA---UUG-CCCGUGg-------GGGUacUGG- -5'
27030 5' -57.5 NC_005832.1 + 9714 0.77 0.220214
Target:  5'- aGCUCCUGACGGuGU-CUCCCGUggaGACCa -3'
miRNA:   3'- aCGAGGAUUGCC-CGuGGGGGUA---CUGG- -5'
27030 5' -57.5 NC_005832.1 + 10272 0.7 0.556778
Target:  5'- cUGUUCCcaggGGCaGGGaCACCCCCAgGuCCa -3'
miRNA:   3'- -ACGAGGa---UUG-CCC-GUGGGGGUaCuGG- -5'
27030 5' -57.5 NC_005832.1 + 10351 0.69 0.597844
Target:  5'- aGgUCCUGGaGGGCGggUUCCCAUGACa -3'
miRNA:   3'- aCgAGGAUUgCCCGU--GGGGGUACUGg -5'
27030 5' -57.5 NC_005832.1 + 11166 1.12 0.000786
Target:  5'- aUGCUCCUAACGGGCACCCCCAUGACCa -3'
miRNA:   3'- -ACGAGGAUUGCCCGUGGGGGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 11465 0.67 0.69096
Target:  5'- aGCUCgUcuuuaacugcggGACGGGCGgcaaguacauCCCCgAUGGCUa -3'
miRNA:   3'- aCGAGgA------------UUGCCCGU----------GGGGgUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 11631 0.71 0.487183
Target:  5'- aGCgUCC-AGCaGGGUGCCCUCGUcGACCu -3'
miRNA:   3'- aCG-AGGaUUG-CCCGUGGGGGUA-CUGG- -5'
27030 5' -57.5 NC_005832.1 + 11819 0.67 0.69096
Target:  5'- gGCUCUggcCGGGC-UCCUCGUGAUg -3'
miRNA:   3'- aCGAGGauuGCCCGuGGGGGUACUGg -5'
27030 5' -57.5 NC_005832.1 + 11897 0.72 0.440076
Target:  5'- gGCUCCgucucccaUAGCGGGCcgcaagacgGCCUaCGUGACCg -3'
miRNA:   3'- aCGAGG--------AUUGCCCG---------UGGGgGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 12943 0.68 0.660054
Target:  5'- gGUUCa-GAUGGGCAUagcggacgCCCCAaUGACCa -3'
miRNA:   3'- aCGAGgaUUGCCCGUG--------GGGGU-ACUGG- -5'
27030 5' -57.5 NC_005832.1 + 13240 0.68 0.628938
Target:  5'- gGC-CCUGAUggaaaaGGGCGCCCUCAUcaaGGCUc -3'
miRNA:   3'- aCGaGGAUUG------CCCGUGGGGGUA---CUGG- -5'
27030 5' -57.5 NC_005832.1 + 16357 0.66 0.78926
Target:  5'- cGcCUCCU-GCGGcCGCCgCgGUGGCCu -3'
miRNA:   3'- aC-GAGGAuUGCCcGUGGgGgUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 16597 0.71 0.468041
Target:  5'- cGCUCUUGAUGGGaucCACCgCCAgGGCUg -3'
miRNA:   3'- aCGAGGAUUGCCC---GUGGgGGUaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 33070 0.77 0.20431
Target:  5'- aGUUCCUGAUGGGCcucGCUCCCGcUGACa -3'
miRNA:   3'- aCGAGGAUUGCCCG---UGGGGGU-ACUGg -5'
27030 5' -57.5 NC_005832.1 + 36645 0.72 0.42197
Target:  5'- gGC-CCUGGCGuacGcCGCCUCCGUGGCCg -3'
miRNA:   3'- aCGaGGAUUGCc--C-GUGGGGGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 39669 0.66 0.751156
Target:  5'- cUGgUCCc-GCGGGU-CCUCCcgGACCc -3'
miRNA:   3'- -ACgAGGauUGCCCGuGGGGGuaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 39904 0.67 0.721413
Target:  5'- cGCUCCg---GGGgGCCUCUA-GACCc -3'
miRNA:   3'- aCGAGGauugCCCgUGGGGGUaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.