miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27030 5' -57.5 NC_005832.1 + 104264 0.69 0.58752
Target:  5'- aGgUCCUGACGGuGUACCUgCAgaUGugCa -3'
miRNA:   3'- aCgAGGAUUGCC-CGUGGGgGU--ACugG- -5'
27030 5' -57.5 NC_005832.1 + 102237 0.72 0.419293
Target:  5'- cGCUCUUGGCGuccauggcugccucGGCgGCCUCCAUGGCg -3'
miRNA:   3'- aCGAGGAUUGC--------------CCG-UGGGGGUACUGg -5'
27030 5' -57.5 NC_005832.1 + 96294 0.78 0.199234
Target:  5'- cGCUCUUGACGGcCACCCUgGUGGCa -3'
miRNA:   3'- aCGAGGAUUGCCcGUGGGGgUACUGg -5'
27030 5' -57.5 NC_005832.1 + 95813 0.7 0.516563
Target:  5'- cUGC-CCUGgccGCGGcCGCUCCCuUGACCg -3'
miRNA:   3'- -ACGaGGAU---UGCCcGUGGGGGuACUGG- -5'
27030 5' -57.5 NC_005832.1 + 95656 0.7 0.536539
Target:  5'- cGCUCCUccguaguCGGcGCACUCCCucucgagGGCCc -3'
miRNA:   3'- aCGAGGAuu-----GCC-CGUGGGGGua-----CUGG- -5'
27030 5' -57.5 NC_005832.1 + 95550 0.66 0.751156
Target:  5'- -aCUCUggacACGGGCuaGCCUCCGcGGCCg -3'
miRNA:   3'- acGAGGau--UGCCCG--UGGGGGUaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 93699 0.66 0.760867
Target:  5'- gGuCUCCUcuGAUGGGauCCCCCAUGgAUCu -3'
miRNA:   3'- aC-GAGGA--UUGCCCguGGGGGUAC-UGG- -5'
27030 5' -57.5 NC_005832.1 + 91770 0.66 0.751156
Target:  5'- cGCgcaccgCCUGACGGGCuuagucaagaccACCCCgCAgagGuCCc -3'
miRNA:   3'- aCGa-----GGAUUGCCCG------------UGGGG-GUa--CuGG- -5'
27030 5' -57.5 NC_005832.1 + 91282 0.71 0.458616
Target:  5'- aUGUUCCaGGCGGGCuuCCUCUGccUGGCCa -3'
miRNA:   3'- -ACGAGGaUUGCCCGu-GGGGGU--ACUGG- -5'
27030 5' -57.5 NC_005832.1 + 90887 0.71 0.477565
Target:  5'- gGCUCCUuACGaGGCAgCUggacgCCGUGACUg -3'
miRNA:   3'- aCGAGGAuUGC-CCGUgGG-----GGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 90779 0.7 0.506687
Target:  5'- aGcCUCCUGAgGGGCccGCCCUC--GGCCg -3'
miRNA:   3'- aC-GAGGAUUgCCCG--UGGGGGuaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 89968 0.66 0.741337
Target:  5'- --aUCaacGCGGGCACCCUCAagagcaUGACUg -3'
miRNA:   3'- acgAGgauUGCCCGUGGGGGU------ACUGG- -5'
27030 5' -57.5 NC_005832.1 + 89837 0.67 0.701174
Target:  5'- aUGCUCUUGA-GGGUGCCCgCGuUGAUg -3'
miRNA:   3'- -ACGAGGAUUgCCCGUGGGgGU-ACUGg -5'
27030 5' -57.5 NC_005832.1 + 89700 0.67 0.701174
Target:  5'- aGCUCgacaggCUGAC-GGC-CCCCC-UGGCCu -3'
miRNA:   3'- aCGAG------GAUUGcCCGuGGGGGuACUGG- -5'
27030 5' -57.5 NC_005832.1 + 81121 0.67 0.69096
Target:  5'- -aCUCUUGGacCGGGCAugUCCCguUGACCg -3'
miRNA:   3'- acGAGGAUU--GCCCGU--GGGGguACUGG- -5'
27030 5' -57.5 NC_005832.1 + 80926 0.66 0.77993
Target:  5'- aGCUCCUGACGGacucuuggguGCAcgaucCCUCCcUGAUg -3'
miRNA:   3'- aCGAGGAUUGCC----------CGU-----GGGGGuACUGg -5'
27030 5' -57.5 NC_005832.1 + 80327 0.66 0.760868
Target:  5'- cGUUCCUcACGGGU-CCCCUGgu-CCa -3'
miRNA:   3'- aCGAGGAuUGCCCGuGGGGGUacuGG- -5'
27030 5' -57.5 NC_005832.1 + 80049 0.73 0.378737
Target:  5'- aGCUCCU-GCGcGCagGCCCCCAUcGCCg -3'
miRNA:   3'- aCGAGGAuUGCcCG--UGGGGGUAcUGG- -5'
27030 5' -57.5 NC_005832.1 + 79849 0.66 0.789261
Target:  5'- gGCUCCcucUGGCagGGGUucuGCCUgUAUGACCc -3'
miRNA:   3'- aCGAGG---AUUG--CCCG---UGGGgGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 78544 0.67 0.721413
Target:  5'- aGCUCCUuGCGcaGGCcguccuuuACCCUgGUGACg -3'
miRNA:   3'- aCGAGGAuUGC--CCG--------UGGGGgUACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.