miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27030 5' -57.5 NC_005832.1 + 11819 0.67 0.69096
Target:  5'- gGCUCUggcCGGGC-UCCUCGUGAUg -3'
miRNA:   3'- aCGAGGauuGCCCGuGGGGGUACUGg -5'
27030 5' -57.5 NC_005832.1 + 81121 0.67 0.69096
Target:  5'- -aCUCUUGGacCGGGCAugUCCCguUGACCg -3'
miRNA:   3'- acGAGGAUU--GCCCGU--GGGGguACUGG- -5'
27030 5' -57.5 NC_005832.1 + 11465 0.67 0.69096
Target:  5'- aGCUCgUcuuuaacugcggGACGGGCGgcaaguacauCCCCgAUGGCUa -3'
miRNA:   3'- aCGAGgA------------UUGCCCGU----------GGGGgUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 72978 0.68 0.680696
Target:  5'- gGC-CCUGA-GGGCGCucagggCCCCA-GACCc -3'
miRNA:   3'- aCGaGGAUUgCCCGUG------GGGGUaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 56526 0.68 0.664192
Target:  5'- gGUUCCUGGCcGGCAggagggccauaggacCCCUCcUGGCCu -3'
miRNA:   3'- aCGAGGAUUGcCCGU---------------GGGGGuACUGG- -5'
27030 5' -57.5 NC_005832.1 + 12943 0.68 0.660054
Target:  5'- gGUUCa-GAUGGGCAUagcggacgCCCCAaUGACCa -3'
miRNA:   3'- aCGAGgaUUGCCCGUG--------GGGGU-ACUGG- -5'
27030 5' -57.5 NC_005832.1 + 44182 0.68 0.660053
Target:  5'- cGgUCCUggUGGGgaaggugucuCACUCCCuggGACCg -3'
miRNA:   3'- aCgAGGAuuGCCC----------GUGGGGGua-CUGG- -5'
27030 5' -57.5 NC_005832.1 + 13240 0.68 0.628938
Target:  5'- gGC-CCUGAUggaaaaGGGCGCCCUCAUcaaGGCUc -3'
miRNA:   3'- aCGaGGAUUG------CCCGUGGGGGUA---CUGG- -5'
27030 5' -57.5 NC_005832.1 + 60248 0.69 0.61856
Target:  5'- aUGCaaccgUCCagGAUGGuGUACCugCCCAUGGCCa -3'
miRNA:   3'- -ACG-----AGGa-UUGCC-CGUGG--GGGUACUGG- -5'
27030 5' -57.5 NC_005832.1 + 10351 0.69 0.597844
Target:  5'- aGgUCCUGGaGGGCGggUUCCCAUGACa -3'
miRNA:   3'- aCgAGGAUUgCCCGU--GGGGGUACUGg -5'
27030 5' -57.5 NC_005832.1 + 104264 0.69 0.58752
Target:  5'- aGgUCCUGACGGuGUACCUgCAgaUGugCa -3'
miRNA:   3'- aCgAGGAUUGCC-CGUGGGgGU--ACugG- -5'
27030 5' -57.5 NC_005832.1 + 43186 0.69 0.58752
Target:  5'- gGCUUCUuugaGGGCGCUCCCGccaGGCUg -3'
miRNA:   3'- aCGAGGAuug-CCCGUGGGGGUa--CUGG- -5'
27030 5' -57.5 NC_005832.1 + 47729 0.69 0.58752
Target:  5'- aGCUcugCCUGACGGGCAUggcggCCgCGaGGCCg -3'
miRNA:   3'- aCGA---GGAUUGCCCGUG-----GGgGUaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 56561 0.69 0.577231
Target:  5'- cGUUCUggucaUggUGGGCGCUCCCGUGGg- -3'
miRNA:   3'- aCGAGG-----AuuGCCCGUGGGGGUACUgg -5'
27030 5' -57.5 NC_005832.1 + 10272 0.7 0.556778
Target:  5'- cUGUUCCcaggGGCaGGGaCACCCCCAgGuCCa -3'
miRNA:   3'- -ACGAGGa---UUG-CCC-GUGGGGGUaCuGG- -5'
27030 5' -57.5 NC_005832.1 + 54163 0.7 0.540568
Target:  5'- -cCUCCUGuuuguuaggacgaggGCGGGCAgCCCCA--GCCu -3'
miRNA:   3'- acGAGGAU---------------UGCCCGUgGGGGUacUGG- -5'
27030 5' -57.5 NC_005832.1 + 95656 0.7 0.536539
Target:  5'- cGCUCCUccguaguCGGcGCACUCCCucucgagGGCCc -3'
miRNA:   3'- aCGAGGAuu-----GCC-CGUGGGGGua-----CUGG- -5'
27030 5' -57.5 NC_005832.1 + 95813 0.7 0.516563
Target:  5'- cUGC-CCUGgccGCGGcCGCUCCCuUGACCg -3'
miRNA:   3'- -ACGaGGAU---UGCCcGUGGGGGuACUGG- -5'
27030 5' -57.5 NC_005832.1 + 90779 0.7 0.506687
Target:  5'- aGcCUCCUGAgGGGCccGCCCUC--GGCCg -3'
miRNA:   3'- aC-GAGGAUUgCCCG--UGGGGGuaCUGG- -5'
27030 5' -57.5 NC_005832.1 + 487 0.71 0.487183
Target:  5'- gGCgUCCUGGuCGGG-GCCCCUGUGgGCCg -3'
miRNA:   3'- aCG-AGGAUU-GCCCgUGGGGGUAC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.