miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27031 5' -57.2 NC_005832.1 + 1446 0.7 0.553507
Target:  5'- gGGGGGCCu--GUGGCUGGGgagGgGACg -3'
miRNA:   3'- gCCUCCGGuagUACCGGUCCa--UgCUG- -5'
27031 5' -57.2 NC_005832.1 + 6586 0.69 0.611362
Target:  5'- aGGAuGGCCGUCAUGuCCAGGgcccaguccaaggGgGACa -3'
miRNA:   3'- gCCU-CCGGUAGUACcGGUCCa------------UgCUG- -5'
27031 5' -57.2 NC_005832.1 + 9275 0.68 0.632216
Target:  5'- aGGAcccuGGUgcaCAUCGUGGCCAGGcucaugaagauugACGGCa -3'
miRNA:   3'- gCCU----CCG---GUAGUACCGGUCCa------------UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 9636 0.67 0.718972
Target:  5'- -uGAuGGCCugcguUCA-GGCCAGGgcCGACg -3'
miRNA:   3'- gcCU-CCGGu----AGUaCCGGUCCauGCUG- -5'
27031 5' -57.2 NC_005832.1 + 10012 0.67 0.729048
Target:  5'- gCGGAGGCC---GUGGCUcacgugAGGcuggACGGCg -3'
miRNA:   3'- -GCCUCCGGuagUACCGG------UCCa---UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 10773 0.67 0.6986
Target:  5'- gCGGAGGCCAggaacccgagUCA-GGUUAGGaggAUGGCc -3'
miRNA:   3'- -GCCUCCGGU----------AGUaCCGGUCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 11307 1.1 0.001185
Target:  5'- gCGGAGGCCAUCAUGGCCAGGUACGACa -3'
miRNA:   3'- -GCCUCCGGUAGUACCGGUCCAUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 11520 0.72 0.445815
Target:  5'- -aGAGGCUgcauaGUCcUGGCCAGGggaGCGGCg -3'
miRNA:   3'- gcCUCCGG-----UAGuACCGGUCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 21244 0.68 0.656193
Target:  5'- aGGAGGUCAgUCAggacGGCCGGGgcgucccUACGGg -3'
miRNA:   3'- gCCUCCGGU-AGUa---CCGGUCC-------AUGCUg -5'
27031 5' -57.2 NC_005832.1 + 32143 0.67 0.739036
Target:  5'- aCGGcAGacaaCAUCAUGGCCggAGGaGCGGCg -3'
miRNA:   3'- -GCC-UCcg--GUAGUACCGG--UCCaUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 36602 0.66 0.796592
Target:  5'- aCGGcGGGCCccCAcGGCugCAGGUGCGGa -3'
miRNA:   3'- -GCC-UCCGGuaGUaCCG--GUCCAUGCUg -5'
27031 5' -57.2 NC_005832.1 + 39088 0.7 0.553507
Target:  5'- aGGAgGGCCGUCcgGGaccCCAGGUucACGGu -3'
miRNA:   3'- gCCU-CCGGUAGuaCC---GGUCCA--UGCUg -5'
27031 5' -57.2 NC_005832.1 + 39450 0.66 0.758712
Target:  5'- cCGGGGGggGUCAUGcuagacccGCCAGGUG-GACg -3'
miRNA:   3'- -GCCUCCggUAGUAC--------CGGUCCAUgCUG- -5'
27031 5' -57.2 NC_005832.1 + 39603 0.66 0.796592
Target:  5'- gGaGAGGCCGgauUCGUGGCCccauagucGGUG-GACg -3'
miRNA:   3'- gC-CUCCGGU---AGUACCGGu-------CCAUgCUG- -5'
27031 5' -57.2 NC_005832.1 + 39864 0.66 0.78733
Target:  5'- uGG-GGCCAgag-GGCCcaaAGGgagACGACg -3'
miRNA:   3'- gCCuCCGGUaguaCCGG---UCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 40860 0.67 0.729048
Target:  5'- cCGGGGGCaucuUUAcGGCCAGGUcCGuCu -3'
miRNA:   3'- -GCCUCCGgu--AGUaCCGGUCCAuGCuG- -5'
27031 5' -57.2 NC_005832.1 + 41733 0.7 0.513182
Target:  5'- uGGAaugaguucccGGCCAUgGUGGCCAGGga-GAa -3'
miRNA:   3'- gCCU----------CCGGUAgUACCGGUCCaugCUg -5'
27031 5' -57.2 NC_005832.1 + 41878 0.67 0.718972
Target:  5'- aCGGGuuucucccuGGCCAcCAUGGCCGGGaACu-- -3'
miRNA:   3'- -GCCU---------CCGGUaGUACCGGUCCaUGcug -5'
27031 5' -57.2 NC_005832.1 + 45961 0.66 0.795673
Target:  5'- aCGGGGGuCCAgaguaCAUGGCCGuccucuacaagcuGGUgAUGGCu -3'
miRNA:   3'- -GCCUCC-GGUa----GUACCGGU-------------CCA-UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 46259 0.67 0.729048
Target:  5'- aGGGGuGUCcUgAUGGCCAGGaGgGACa -3'
miRNA:   3'- gCCUC-CGGuAgUACCGGUCCaUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.