miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27031 5' -57.2 NC_005832.1 + 41733 0.7 0.513182
Target:  5'- uGGAaugaguucccGGCCAUgGUGGCCAGGga-GAa -3'
miRNA:   3'- gCCU----------CCGGUAgUACCGGUCCaugCUg -5'
27031 5' -57.2 NC_005832.1 + 39603 0.66 0.796592
Target:  5'- gGaGAGGCCGgauUCGUGGCCccauagucGGUG-GACg -3'
miRNA:   3'- gC-CUCCGGU---AGUACCGGu-------CCAUgCUG- -5'
27031 5' -57.2 NC_005832.1 + 39864 0.66 0.78733
Target:  5'- uGG-GGCCAgag-GGCCcaaAGGgagACGACg -3'
miRNA:   3'- gCCuCCGGUaguaCCGG---UCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 103473 0.66 0.777923
Target:  5'- gCGGAGGUCcUCggGGuCCAGGacUACG-Ca -3'
miRNA:   3'- -GCCUCCGGuAGuaCC-GGUCC--AUGCuG- -5'
27031 5' -57.2 NC_005832.1 + 89475 0.66 0.768381
Target:  5'- uGGuAGGCCAUgGUGGCCuccaucaccuuGGGagGgGGCa -3'
miRNA:   3'- gCC-UCCGGUAgUACCGG-----------UCCa-UgCUG- -5'
27031 5' -57.2 NC_005832.1 + 32143 0.67 0.739036
Target:  5'- aCGGcAGacaaCAUCAUGGCCggAGGaGCGGCg -3'
miRNA:   3'- -GCC-UCcg--GUAGUACCGG--UCCaUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 40860 0.67 0.729048
Target:  5'- cCGGGGGCaucuUUAcGGCCAGGUcCGuCu -3'
miRNA:   3'- -GCCUCCGgu--AGUaCCGGUCCAuGCuG- -5'
27031 5' -57.2 NC_005832.1 + 80029 0.67 0.729048
Target:  5'- --aGGGCCcUCGaGaCCAGGUACGACu -3'
miRNA:   3'- gccUCCGGuAGUaCcGGUCCAUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 72069 0.67 0.718972
Target:  5'- uGGcGGCCGUCGUGGUgGGaGUGagGAUg -3'
miRNA:   3'- gCCuCCGGUAGUACCGgUC-CAUg-CUG- -5'
27031 5' -57.2 NC_005832.1 + 67092 0.67 0.718972
Target:  5'- uGGAGGCCAcucCGUacgaGGCCAGGgAgGAa -3'
miRNA:   3'- gCCUCCGGUa--GUA----CCGGUCCaUgCUg -5'
27031 5' -57.2 NC_005832.1 + 75797 0.68 0.657234
Target:  5'- uGGGcGCCAUgGgcugGGCCAGGUACcuGCa -3'
miRNA:   3'- gCCUcCGGUAgUa---CCGGUCCAUGc-UG- -5'
27031 5' -57.2 NC_005832.1 + 6586 0.69 0.611362
Target:  5'- aGGAuGGCCGUCAUGuCCAGGgcccaguccaaggGgGACa -3'
miRNA:   3'- gCCU-CCGGUAGUACcGGUCCa------------UgCUG- -5'
27031 5' -57.2 NC_005832.1 + 77374 0.69 0.584358
Target:  5'- gGGGGGacaUGUCA-GGUauCAGGUGCGACa -3'
miRNA:   3'- gCCUCCg--GUAGUaCCG--GUCCAUGCUG- -5'
27031 5' -57.2 NC_005832.1 + 39088 0.7 0.553507
Target:  5'- aGGAgGGCCGUCcgGGaccCCAGGUucACGGu -3'
miRNA:   3'- gCCU-CCGGUAGuaCC---GGUCCA--UGCUg -5'
27031 5' -57.2 NC_005832.1 + 52705 0.69 0.5885
Target:  5'- aCGGAgugagGGCCGUggugguggacuugggCAUGGCCAGGaucccCGGCa -3'
miRNA:   3'- -GCCU-----CCGGUA---------------GUACCGGUCCau---GCUG- -5'
27031 5' -57.2 NC_005832.1 + 1446 0.7 0.553507
Target:  5'- gGGGGGCCu--GUGGCUGGGgagGgGACg -3'
miRNA:   3'- gCCUCCGGuagUACCGGUCCa--UgCUG- -5'
27031 5' -57.2 NC_005832.1 + 11520 0.72 0.445815
Target:  5'- -aGAGGCUgcauaGUCcUGGCCAGGggaGCGGCg -3'
miRNA:   3'- gcCUCCGG-----UAGuACCGGUCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 89601 0.73 0.374447
Target:  5'- uGGAGGCCAcCAUGGCCuaccagaAGGagcACGAUc -3'
miRNA:   3'- gCCUCCGGUaGUACCGG-------UCCa--UGCUG- -5'
27031 5' -57.2 NC_005832.1 + 76819 0.73 0.367008
Target:  5'- gGGAGGCgucugaaaaCAUGGCCAGGUACa-- -3'
miRNA:   3'- gCCUCCGgua------GUACCGGUCCAUGcug -5'
27031 5' -57.2 NC_005832.1 + 36602 0.66 0.796592
Target:  5'- aCGGcGGGCCccCAcGGCugCAGGUGCGGa -3'
miRNA:   3'- -GCC-UCCGGuaGUaCCG--GUCCAUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.