Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27031 | 5' | -57.2 | NC_005832.1 | + | 9275 | 0.68 | 0.632216 |
Target: 5'- aGGAcccuGGUgcaCAUCGUGGCCAGGcucaugaagauugACGGCa -3' miRNA: 3'- gCCU----CCG---GUAGUACCGGUCCa------------UGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 47988 | 0.66 | 0.748927 |
Target: 5'- gCGGGGGCCAUaauccugaGGCCGGGaaaGAa -3' miRNA: 3'- -GCCUCCGGUAgua-----CCGGUCCaugCUg -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 36602 | 0.66 | 0.796592 |
Target: 5'- aCGGcGGGCCccCAcGGCugCAGGUGCGGa -3' miRNA: 3'- -GCC-UCCGGuaGUaCCG--GUCCAUGCUg -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 11307 | 1.1 | 0.001185 |
Target: 5'- gCGGAGGCCAUCAUGGCCAGGUACGACa -3' miRNA: 3'- -GCCUCCGGUAGUACCGGUCCAUGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 76819 | 0.73 | 0.367008 |
Target: 5'- gGGAGGCgucugaaaaCAUGGCCAGGUACa-- -3' miRNA: 3'- gCCUCCGgua------GUACCGGUCCAUGcug -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 89601 | 0.73 | 0.374447 |
Target: 5'- uGGAGGCCAcCAUGGCCuaccagaAGGagcACGAUc -3' miRNA: 3'- gCCUCCGGUaGUACCGG-------UCCa--UGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 11520 | 0.72 | 0.445815 |
Target: 5'- -aGAGGCUgcauaGUCcUGGCCAGGggaGCGGCg -3' miRNA: 3'- gcCUCCGG-----UAGuACCGGUCCa--UGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 1446 | 0.7 | 0.553507 |
Target: 5'- gGGGGGCCu--GUGGCUGGGgagGgGACg -3' miRNA: 3'- gCCUCCGGuagUACCGGUCCa--UgCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 52705 | 0.69 | 0.5885 |
Target: 5'- aCGGAgugagGGCCGUggugguggacuugggCAUGGCCAGGaucccCGGCa -3' miRNA: 3'- -GCCU-----CCGGUA---------------GUACCGGUCCau---GCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 91762 | 0.66 | 0.748927 |
Target: 5'- gGGAGGCg---GUGGCgGGG-ACGGCa -3' miRNA: 3'- gCCUCCGguagUACCGgUCCaUGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 9636 | 0.67 | 0.718972 |
Target: 5'- -uGAuGGCCugcguUCA-GGCCAGGgcCGACg -3' miRNA: 3'- gcCU-CCGGu----AGUaCCGGUCCauGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 41878 | 0.67 | 0.718972 |
Target: 5'- aCGGGuuucucccuGGCCAcCAUGGCCGGGaACu-- -3' miRNA: 3'- -GCCU---------CCGGUaGUACCGGUCCaUGcug -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 21244 | 0.68 | 0.656193 |
Target: 5'- aGGAGGUCAgUCAggacGGCCGGGgcgucccUACGGg -3' miRNA: 3'- gCCUCCGGU-AGUa---CCGGUCC-------AUGCUg -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 46259 | 0.67 | 0.729048 |
Target: 5'- aGGGGuGUCcUgAUGGCCAGGaGgGACa -3' miRNA: 3'- gCCUC-CGGuAgUACCGGUCCaUgCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 53044 | 0.68 | 0.657234 |
Target: 5'- uGGucGCCggCAggauccugagGGCCAGGaGCGACg -3' miRNA: 3'- gCCucCGGuaGUa---------CCGGUCCaUGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 56144 | 0.67 | 0.70882 |
Target: 5'- cCGGGGGCaagaccCAgGGCCGcGUACGGCu -3' miRNA: 3'- -GCCUCCGgua---GUaCCGGUcCAUGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 10012 | 0.67 | 0.729048 |
Target: 5'- gCGGAGGCC---GUGGCUcacgugAGGcuggACGGCg -3' miRNA: 3'- -GCCUCCGGuagUACCGG------UCCa---UGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 39450 | 0.66 | 0.758712 |
Target: 5'- cCGGGGGggGUCAUGcuagacccGCCAGGUG-GACg -3' miRNA: 3'- -GCCUCCggUAGUAC--------CGGUCCAUgCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 51878 | 0.68 | 0.667629 |
Target: 5'- gGGAGGCCcugggUAUGGCuCAGG--CGGCc -3' miRNA: 3'- gCCUCCGGua---GUACCG-GUCCauGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 10773 | 0.67 | 0.6986 |
Target: 5'- gCGGAGGCCAggaacccgagUCA-GGUUAGGaggAUGGCc -3' miRNA: 3'- -GCCUCCGGU----------AGUaCCGGUCCa--UGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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