Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27031 | 5' | -57.2 | NC_005832.1 | + | 103473 | 0.66 | 0.777923 |
Target: 5'- gCGGAGGUCcUCggGGuCCAGGacUACG-Ca -3' miRNA: 3'- -GCCUCCGGuAGuaCC-GGUCC--AUGCuG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 97558 | 0.69 | 0.605116 |
Target: 5'- aGGuGGCCAgcgcCGUGGUCAucUGCGACa -3' miRNA: 3'- gCCuCCGGUa---GUACCGGUccAUGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 97396 | 0.66 | 0.78733 |
Target: 5'- -cGAGGCC-----GGCCAGGcugGCGACu -3' miRNA: 3'- gcCUCCGGuaguaCCGGUCCa--UGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 91762 | 0.66 | 0.748927 |
Target: 5'- gGGAGGCg---GUGGCgGGG-ACGGCa -3' miRNA: 3'- gCCUCCGguagUACCGgUCCaUGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 89601 | 0.73 | 0.374447 |
Target: 5'- uGGAGGCCAcCAUGGCCuaccagaAGGagcACGAUc -3' miRNA: 3'- gCCUCCGGUaGUACCGG-------UCCa--UGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 89475 | 0.66 | 0.768381 |
Target: 5'- uGGuAGGCCAUgGUGGCCuccaucaccuuGGGagGgGGCa -3' miRNA: 3'- gCC-UCCGGUAgUACCGG-----------UCCa-UgCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 80029 | 0.67 | 0.729048 |
Target: 5'- --aGGGCCcUCGaGaCCAGGUACGACu -3' miRNA: 3'- gccUCCGGuAGUaCcGGUCCAUGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 77374 | 0.69 | 0.584358 |
Target: 5'- gGGGGGacaUGUCA-GGUauCAGGUGCGACa -3' miRNA: 3'- gCCUCCg--GUAGUaCCG--GUCCAUGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 76819 | 0.73 | 0.367008 |
Target: 5'- gGGAGGCgucugaaaaCAUGGCCAGGUACa-- -3' miRNA: 3'- gCCUCCGgua------GUACCGGUCCAUGcug -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 75797 | 0.68 | 0.657234 |
Target: 5'- uGGGcGCCAUgGgcugGGCCAGGUACcuGCa -3' miRNA: 3'- gCCUcCGGUAgUa---CCGGUCCAUGc-UG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 72069 | 0.67 | 0.718972 |
Target: 5'- uGGcGGCCGUCGUGGUgGGaGUGagGAUg -3' miRNA: 3'- gCCuCCGGUAGUACCGgUC-CAUg-CUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 67092 | 0.67 | 0.718972 |
Target: 5'- uGGAGGCCAcucCGUacgaGGCCAGGgAgGAa -3' miRNA: 3'- gCCUCCGGUa--GUA----CCGGUCCaUgCUg -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 56144 | 0.67 | 0.70882 |
Target: 5'- cCGGGGGCaagaccCAgGGCCGcGUACGGCu -3' miRNA: 3'- -GCCUCCGgua---GUaCCGGUcCAUGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 53044 | 0.68 | 0.657234 |
Target: 5'- uGGucGCCggCAggauccugagGGCCAGGaGCGACg -3' miRNA: 3'- gCCucCGGuaGUa---------CCGGUCCaUGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 52705 | 0.69 | 0.5885 |
Target: 5'- aCGGAgugagGGCCGUggugguggacuugggCAUGGCCAGGaucccCGGCa -3' miRNA: 3'- -GCCU-----CCGGUA---------------GUACCGGUCCau---GCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 51878 | 0.68 | 0.667629 |
Target: 5'- gGGAGGCCcugggUAUGGCuCAGG--CGGCc -3' miRNA: 3'- gCCUCCGGua---GUACCG-GUCCauGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 47988 | 0.66 | 0.748927 |
Target: 5'- gCGGGGGCCAUaauccugaGGCCGGGaaaGAa -3' miRNA: 3'- -GCCUCCGGUAgua-----CCGGUCCaugCUg -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 46259 | 0.67 | 0.729048 |
Target: 5'- aGGGGuGUCcUgAUGGCCAGGaGgGACa -3' miRNA: 3'- gCCUC-CGGuAgUACCGGUCCaUgCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 45961 | 0.66 | 0.795673 |
Target: 5'- aCGGGGGuCCAgaguaCAUGGCCGuccucuacaagcuGGUgAUGGCu -3' miRNA: 3'- -GCCUCC-GGUa----GUACCGGU-------------CCA-UGCUG- -5' |
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27031 | 5' | -57.2 | NC_005832.1 | + | 41878 | 0.67 | 0.718972 |
Target: 5'- aCGGGuuucucccuGGCCAcCAUGGCCGGGaACu-- -3' miRNA: 3'- -GCCU---------CCGGUaGUACCGGUCCaUGcug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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