miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27032 3' -63.2 NC_005832.1 + 103474 0.66 0.520755
Target:  5'- -cGGAGGuCCucgggGUCCAGGACuacgcaacuGCCCCGg -3'
miRNA:   3'- cuCCUCCcGG-----CAGGUCCUGc--------UGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 96210 0.66 0.520755
Target:  5'- cGuuGAGGaCCaGUCCGGuGACGGCCCaCGa -3'
miRNA:   3'- -CucCUCCcGG-CAGGUC-CUGCUGGG-GC- -5'
27032 3' -63.2 NC_005832.1 + 65717 0.66 0.517904
Target:  5'- aGAGGcugAGGGCCcuccagauauccauGUCCAGGccCGACCUgGc -3'
miRNA:   3'- -CUCC---UCCCGG--------------CAGGUCCu-GCUGGGgC- -5'
27032 3' -63.2 NC_005832.1 + 20592 0.66 0.511276
Target:  5'- cGGGAGGGuuGcCCAucaugcGGACaGACaCCCa -3'
miRNA:   3'- cUCCUCCCggCaGGU------CCUG-CUG-GGGc -5'
27032 3' -63.2 NC_005832.1 + 3113 0.66 0.511276
Target:  5'- uGGGuuGGuGCCGUCCAGGuCGuACUCUa -3'
miRNA:   3'- cUCCu-CC-CGGCAGGUCCuGC-UGGGGc -5'
27032 3' -63.2 NC_005832.1 + 78195 0.66 0.508447
Target:  5'- aAGGuguuuaaucugcuaGGGGCCGUagagggaaAGGACGACCUCc -3'
miRNA:   3'- cUCC--------------UCCCGGCAgg------UCCUGCUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 52703 0.66 0.501871
Target:  5'- gGAGuGAGGGCCGUgguGGugGACUUgGg -3'
miRNA:   3'- -CUC-CUCCCGGCAgguCCugCUGGGgC- -5'
27032 3' -63.2 NC_005832.1 + 72819 0.66 0.501871
Target:  5'- cGGGAGGGCC-UCCuaaaccccuGGGACcaacggGACCCUu -3'
miRNA:   3'- cUCCUCCCGGcAGG---------UCCUG------CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 54372 0.66 0.492541
Target:  5'- cGGGGAGGacaGCaCGguggaCAGGGuCGGCCCCa -3'
miRNA:   3'- -CUCCUCC---CG-GCag---GUCCU-GCUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 613 0.66 0.483293
Target:  5'- cAGGGGccCCGaCCAGGACGccGCCCUGg -3'
miRNA:   3'- cUCCUCccGGCaGGUCCUGC--UGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 96685 0.66 0.482372
Target:  5'- cGAGGAGGccggcaaGCUGUCCGaGAUGGCCgCa -3'
miRNA:   3'- -CUCCUCC-------CGGCAGGUcCUGCUGGgGc -5'
27032 3' -63.2 NC_005832.1 + 17106 0.67 0.474128
Target:  5'- --uGAGGGCCaUCCAGGACcuccuGAUCCUc -3'
miRNA:   3'- cucCUCCCGGcAGGUCCUG-----CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 1385 0.67 0.429689
Target:  5'- uAGGAGGGacaggaggaUGcCCAGGAUGuuCCCCGu -3'
miRNA:   3'- cUCCUCCCg--------GCaGGUCCUGCu-GGGGC- -5'
27032 3' -63.2 NC_005832.1 + 41564 0.68 0.421097
Target:  5'- gGAGGAGGccgccGCCGUCaGGGAgGcGCCCuCGg -3'
miRNA:   3'- -CUCCUCC-----CGGCAGgUCCUgC-UGGG-GC- -5'
27032 3' -63.2 NC_005832.1 + 90009 0.68 0.41261
Target:  5'- uGAGGuGGGCCGUgauGGAgGAgCCCa -3'
miRNA:   3'- -CUCCuCCCGGCAgguCCUgCUgGGGc -5'
27032 3' -63.2 NC_005832.1 + 96769 0.68 0.41261
Target:  5'- gGAGGGGGuGacaaCGUCCAcGGCGuCCCUGg -3'
miRNA:   3'- -CUCCUCC-Cg---GCAGGUcCUGCuGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 101880 0.68 0.404229
Target:  5'- --uGAGGGCCGggaAGGGCuugGACCCCa -3'
miRNA:   3'- cucCUCCCGGCaggUCCUG---CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 72376 0.68 0.395957
Target:  5'- aGGGAGGGCCaacggaaCCaaAGGGCGAcaagggacCCCCGg -3'
miRNA:   3'- cUCCUCCCGGca-----GG--UCCUGCU--------GGGGC- -5'
27032 3' -63.2 NC_005832.1 + 32036 0.68 0.394316
Target:  5'- aGGGAGGgucaGCCGUCCugAGGGagcccaaucccaGACCCCa -3'
miRNA:   3'- cUCCUCC----CGGCAGG--UCCUg-----------CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 80104 0.68 0.387795
Target:  5'- aGGGGGaGGCUcagguacagGUCCAGGA-GACCCaCGg -3'
miRNA:   3'- cUCCUC-CCGG---------CAGGUCCUgCUGGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.