miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27032 3' -63.2 NC_005832.1 + 39087 0.85 0.026966
Target:  5'- cAGGAGGGCCGUCCGGGAccccagguucaCGGuCCCCGa -3'
miRNA:   3'- cUCCUCCCGGCAGGUCCU-----------GCU-GGGGC- -5'
27032 3' -63.2 NC_005832.1 + 103474 0.66 0.520755
Target:  5'- -cGGAGGuCCucgggGUCCAGGACuacgcaacuGCCCCGg -3'
miRNA:   3'- cuCCUCCcGG-----CAGGUCCUGc--------UGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 65717 0.66 0.517904
Target:  5'- aGAGGcugAGGGCCcuccagauauccauGUCCAGGccCGACCUgGc -3'
miRNA:   3'- -CUCC---UCCCGG--------------CAGGUCCu-GCUGGGgC- -5'
27032 3' -63.2 NC_005832.1 + 78195 0.66 0.508447
Target:  5'- aAGGuguuuaaucugcuaGGGGCCGUagagggaaAGGACGACCUCc -3'
miRNA:   3'- cUCC--------------UCCCGGCAgg------UCCUGCUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 54372 0.66 0.492541
Target:  5'- cGGGGAGGacaGCaCGguggaCAGGGuCGGCCCCa -3'
miRNA:   3'- -CUCCUCC---CG-GCag---GUCCU-GCUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 96685 0.66 0.482372
Target:  5'- cGAGGAGGccggcaaGCUGUCCGaGAUGGCCgCa -3'
miRNA:   3'- -CUCCUCC-------CGGCAGGUcCUGCUGGgGc -5'
27032 3' -63.2 NC_005832.1 + 72376 0.68 0.395957
Target:  5'- aGGGAGGGCCaacggaaCCaaAGGGCGAcaagggacCCCCGg -3'
miRNA:   3'- cUCCUCCCGGca-----GG--UCCUGCU--------GGGGC- -5'
27032 3' -63.2 NC_005832.1 + 32036 0.68 0.394316
Target:  5'- aGGGAGGgucaGCCGUCCugAGGGagcccaaucccaGACCCCa -3'
miRNA:   3'- cUCCUCC----CGGCAGG--UCCUg-----------CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 2660 0.68 0.387795
Target:  5'- gGAGGAGGGCC--UguGGACuauggcgagGACCCUGu -3'
miRNA:   3'- -CUCCUCCCGGcaGguCCUG---------CUGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 80104 0.68 0.387795
Target:  5'- aGGGGGaGGCUcagguacagGUCCAGGA-GACCCaCGg -3'
miRNA:   3'- cUCCUC-CCGG---------CAGGUCCUgCUGGG-GC- -5'
27032 3' -63.2 NC_005832.1 + 78346 0.68 0.379744
Target:  5'- uGGGGuucgcGGcGGCCGUgCAGGACaGCCUCGu -3'
miRNA:   3'- -CUCC-----UC-CCGGCAgGUCCUGcUGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 11554 0.79 0.075325
Target:  5'- aAGGcGGGGUCGUCCuGGACGGCCCUc -3'
miRNA:   3'- cUCC-UCCCGGCAGGuCCUGCUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 54816 0.74 0.17371
Target:  5'- -cGGGGGGaCCGUCCuggaccccguGGACGACCUgGg -3'
miRNA:   3'- cuCCUCCC-GGCAGGu---------CCUGCUGGGgC- -5'
27032 3' -63.2 NC_005832.1 + 81134 0.73 0.195701
Target:  5'- uAGGAGGGCCGUCguagacugggaaCGGGGCcuugcggugccguGGCCCCu -3'
miRNA:   3'- cUCCUCCCGGCAG------------GUCCUG-------------CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 39520 0.71 0.248755
Target:  5'- cAGGAGGGgUugaucuuaaggGUCCGGGAgGACCCgCGg -3'
miRNA:   3'- cUCCUCCCgG-----------CAGGUCCUgCUGGG-GC- -5'
27032 3' -63.2 NC_005832.1 + 21078 0.71 0.266658
Target:  5'- gGAGGAGGcuggugauuGCCGgggCCcguaGGGACG-CCCCGg -3'
miRNA:   3'- -CUCCUCC---------CGGCa--GG----UCCUGCuGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 7459 0.71 0.279163
Target:  5'- uGAGGAGGcagugcgugguGCCG-CUgaAGGugGACCCCu -3'
miRNA:   3'- -CUCCUCC-----------CGGCaGG--UCCugCUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 98137 0.7 0.303519
Target:  5'- uGAGGAcGGCCGUaggCAGGACauaucacacccuguGGCCCCa -3'
miRNA:   3'- -CUCCUcCCGGCAg--GUCCUG--------------CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 96210 0.66 0.520755
Target:  5'- cGuuGAGGaCCaGUCCGGuGACGGCCCaCGa -3'
miRNA:   3'- -CucCUCCcGG-CAGGUC-CUGCUGGG-GC- -5'
27032 3' -63.2 NC_005832.1 + 65840 0.73 0.194758
Target:  5'- -uGGAGGGCCcucagccucugguuGUCCuccguGGACGuCCCCGc -3'
miRNA:   3'- cuCCUCCCGG--------------CAGGu----CCUGCuGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.