miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27032 3' -63.2 NC_005832.1 + 1385 0.67 0.429689
Target:  5'- uAGGAGGGacaggaggaUGcCCAGGAUGuuCCCCGu -3'
miRNA:   3'- cUCCUCCCg--------GCaGGUCCUGCu-GGGGC- -5'
27032 3' -63.2 NC_005832.1 + 17106 0.67 0.474128
Target:  5'- --uGAGGGCCaUCCAGGACcuccuGAUCCUc -3'
miRNA:   3'- cucCUCCCGGcAGGUCCUG-----CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 613 0.66 0.483293
Target:  5'- cAGGGGccCCGaCCAGGACGccGCCCUGg -3'
miRNA:   3'- cUCCUCccGGCaGGUCCUGC--UGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 72819 0.66 0.501871
Target:  5'- cGGGAGGGCC-UCCuaaaccccuGGGACcaacggGACCCUu -3'
miRNA:   3'- cUCCUCCCGGcAGG---------UCCUG------CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 52703 0.66 0.501871
Target:  5'- gGAGuGAGGGCCGUgguGGugGACUUgGg -3'
miRNA:   3'- -CUC-CUCCCGGCAgguCCugCUGGGgC- -5'
27032 3' -63.2 NC_005832.1 + 20592 0.66 0.511276
Target:  5'- cGGGAGGGuuGcCCAucaugcGGACaGACaCCCa -3'
miRNA:   3'- cUCCUCCCggCaGGU------CCUG-CUG-GGGc -5'
27032 3' -63.2 NC_005832.1 + 3113 0.66 0.511276
Target:  5'- uGGGuuGGuGCCGUCCAGGuCGuACUCUa -3'
miRNA:   3'- cUCCu-CC-CGGCAGGUCCuGC-UGGGGc -5'
27032 3' -63.2 NC_005832.1 + 96210 0.66 0.520755
Target:  5'- cGuuGAGGaCCaGUCCGGuGACGGCCCaCGa -3'
miRNA:   3'- -CucCUCCcGG-CAGGUC-CUGCUGGG-GC- -5'
27032 3' -63.2 NC_005832.1 + 96769 0.68 0.41261
Target:  5'- gGAGGGGGuGacaaCGUCCAcGGCGuCCCUGg -3'
miRNA:   3'- -CUCCUCC-Cg---GCAGGUcCUGCuGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 101880 0.68 0.404229
Target:  5'- --uGAGGGCCGggaAGGGCuugGACCCCa -3'
miRNA:   3'- cucCUCCCGGCaggUCCUG---CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 33084 0.68 0.379744
Target:  5'- -cGGGGuGGCCGUCCAGuuccuGAUgGGCCUCGc -3'
miRNA:   3'- cuCCUC-CCGGCAGGUC-----CUG-CUGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 65840 0.73 0.194758
Target:  5'- -uGGAGGGCCcucagccucugguuGUCCuccguGGACGuCCCCGc -3'
miRNA:   3'- cuCCUCCCGG--------------CAGGu----CCUGCuGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 42503 0.73 0.200962
Target:  5'- uGAGGAGGGCCG-CCAugcucugguGGugGACCguCCu -3'
miRNA:   3'- -CUCCUCCCGGCaGGU---------CCugCUGG--GGc -5'
27032 3' -63.2 NC_005832.1 + 80733 0.72 0.219565
Target:  5'- cAGGAGGcaggccucgcaugcGCCGUCCAGGAUG-CCCg- -3'
miRNA:   3'- cUCCUCC--------------CGGCAGGUCCUGCuGGGgc -5'
27032 3' -63.2 NC_005832.1 + 96021 0.72 0.226443
Target:  5'- aGGGGAGGGCCcguGUUCAGGGC--CCUCGa -3'
miRNA:   3'- -CUCCUCCCGG---CAGGUCCUGcuGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 95607 0.72 0.226443
Target:  5'- aGGGGAGGGCCcguGUUCAGGGC--CCUCGa -3'
miRNA:   3'- -CUCCUCCCGG---CAGGUCCUGcuGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 90538 0.71 0.279163
Target:  5'- cGGGAGGcccgaggacaaGCUGUCgAGGAgGGCCCCc -3'
miRNA:   3'- cUCCUCC-----------CGGCAGgUCCUgCUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 26597 0.7 0.292131
Target:  5'- uGGcGAGGGCCG-CCGGGugGcuGCCCg- -3'
miRNA:   3'- cUC-CUCCCGGCaGGUCCugC--UGGGgc -5'
27032 3' -63.2 NC_005832.1 + 95817 0.69 0.333838
Target:  5'- aGGGGAGGGCacguGUUCAGGGC--CCUCGa -3'
miRNA:   3'- -CUCCUCCCGg---CAGGUCCUGcuGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 95942 0.69 0.333838
Target:  5'- aGGGAGcGGCCGcggCCAGGGCaGCaagCCCGa -3'
miRNA:   3'- cUCCUC-CCGGCa--GGUCCUGcUG---GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.