Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27032 | 3' | -63.2 | NC_005832.1 | + | 65717 | 0.66 | 0.517904 |
Target: 5'- aGAGGcugAGGGCCcuccagauauccauGUCCAGGccCGACCUgGc -3' miRNA: 3'- -CUCC---UCCCGG--------------CAGGUCCu-GCUGGGgC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 65840 | 0.73 | 0.194758 |
Target: 5'- -uGGAGGGCCcucagccucugguuGUCCuccguGGACGuCCCCGc -3' miRNA: 3'- cuCCUCCCGG--------------CAGGu----CCUGCuGGGGC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 72376 | 0.68 | 0.395957 |
Target: 5'- aGGGAGGGCCaacggaaCCaaAGGGCGAcaagggacCCCCGg -3' miRNA: 3'- cUCCUCCCGGca-----GG--UCCUGCU--------GGGGC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 72819 | 0.66 | 0.501871 |
Target: 5'- cGGGAGGGCC-UCCuaaaccccuGGGACcaacggGACCCUu -3' miRNA: 3'- cUCCUCCCGGcAGG---------UCCUG------CUGGGGc -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 78195 | 0.66 | 0.508447 |
Target: 5'- aAGGuguuuaaucugcuaGGGGCCGUagagggaaAGGACGACCUCc -3' miRNA: 3'- cUCC--------------UCCCGGCAgg------UCCUGCUGGGGc -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 78346 | 0.68 | 0.379744 |
Target: 5'- uGGGGuucgcGGcGGCCGUgCAGGACaGCCUCGu -3' miRNA: 3'- -CUCC-----UC-CCGGCAgGUCCUGcUGGGGC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 80104 | 0.68 | 0.387795 |
Target: 5'- aGGGGGaGGCUcagguacagGUCCAGGA-GACCCaCGg -3' miRNA: 3'- cUCCUC-CCGG---------CAGGUCCUgCUGGG-GC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 80733 | 0.72 | 0.219565 |
Target: 5'- cAGGAGGcaggccucgcaugcGCCGUCCAGGAUG-CCCg- -3' miRNA: 3'- cUCCUCC--------------CGGCAGGUCCUGCuGGGgc -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 81134 | 0.73 | 0.195701 |
Target: 5'- uAGGAGGGCCGUCguagacugggaaCGGGGCcuugcggugccguGGCCCCu -3' miRNA: 3'- cUCCUCCCGGCAG------------GUCCUG-------------CUGGGGc -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 90009 | 0.68 | 0.41261 |
Target: 5'- uGAGGuGGGCCGUgauGGAgGAgCCCa -3' miRNA: 3'- -CUCCuCCCGGCAgguCCUgCUgGGGc -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 90538 | 0.71 | 0.279163 |
Target: 5'- cGGGAGGcccgaggacaaGCUGUCgAGGAgGGCCCCc -3' miRNA: 3'- cUCCUCC-----------CGGCAGgUCCUgCUGGGGc -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 95607 | 0.72 | 0.226443 |
Target: 5'- aGGGGAGGGCCcguGUUCAGGGC--CCUCGa -3' miRNA: 3'- -CUCCUCCCGG---CAGGUCCUGcuGGGGC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 95817 | 0.69 | 0.333838 |
Target: 5'- aGGGGAGGGCacguGUUCAGGGC--CCUCGa -3' miRNA: 3'- -CUCCUCCCGg---CAGGUCCUGcuGGGGC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 95942 | 0.69 | 0.333838 |
Target: 5'- aGGGAGcGGCCGcggCCAGGGCaGCaagCCCGa -3' miRNA: 3'- cUCCUC-CCGGCa--GGUCCUGcUG---GGGC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 96021 | 0.72 | 0.226443 |
Target: 5'- aGGGGAGGGCCcguGUUCAGGGC--CCUCGa -3' miRNA: 3'- -CUCCUCCCGG---CAGGUCCUGcuGGGGC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 96210 | 0.66 | 0.520755 |
Target: 5'- cGuuGAGGaCCaGUCCGGuGACGGCCCaCGa -3' miRNA: 3'- -CucCUCCcGG-CAGGUC-CUGCUGGG-GC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 96685 | 0.66 | 0.482372 |
Target: 5'- cGAGGAGGccggcaaGCUGUCCGaGAUGGCCgCa -3' miRNA: 3'- -CUCCUCC-------CGGCAGGUcCUGCUGGgGc -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 96769 | 0.68 | 0.41261 |
Target: 5'- gGAGGGGGuGacaaCGUCCAcGGCGuCCCUGg -3' miRNA: 3'- -CUCCUCC-Cg---GCAGGUcCUGCuGGGGC- -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 98137 | 0.7 | 0.303519 |
Target: 5'- uGAGGAcGGCCGUaggCAGGACauaucacacccuguGGCCCCa -3' miRNA: 3'- -CUCCUcCCGGCAg--GUCCUG--------------CUGGGGc -5' |
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27032 | 3' | -63.2 | NC_005832.1 | + | 101880 | 0.68 | 0.404229 |
Target: 5'- --uGAGGGCCGggaAGGGCuugGACCCCa -3' miRNA: 3'- cucCUCCCGGCaggUCCUG---CUGGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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