miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27032 3' -63.2 NC_005832.1 + 613 0.66 0.483293
Target:  5'- cAGGGGccCCGaCCAGGACGccGCCCUGg -3'
miRNA:   3'- cUCCUCccGGCaGGUCCUGC--UGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 1385 0.67 0.429689
Target:  5'- uAGGAGGGacaggaggaUGcCCAGGAUGuuCCCCGu -3'
miRNA:   3'- cUCCUCCCg--------GCaGGUCCUGCu-GGGGC- -5'
27032 3' -63.2 NC_005832.1 + 2660 0.68 0.387795
Target:  5'- gGAGGAGGGCC--UguGGACuauggcgagGACCCUGu -3'
miRNA:   3'- -CUCCUCCCGGcaGguCCUG---------CUGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 3113 0.66 0.511276
Target:  5'- uGGGuuGGuGCCGUCCAGGuCGuACUCUa -3'
miRNA:   3'- cUCCu-CC-CGGCAGGUCCuGC-UGGGGc -5'
27032 3' -63.2 NC_005832.1 + 7459 0.71 0.279163
Target:  5'- uGAGGAGGcagugcgugguGCCG-CUgaAGGugGACCCCu -3'
miRNA:   3'- -CUCCUCC-----------CGGCaGG--UCCugCUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 11554 0.79 0.075325
Target:  5'- aAGGcGGGGUCGUCCuGGACGGCCCUc -3'
miRNA:   3'- cUCC-UCCCGGCAGGuCCUGCUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 11689 1.07 0.000696
Target:  5'- uGAGGAGGGCCGUCCAGGACGACCCCGc -3'
miRNA:   3'- -CUCCUCCCGGCAGGUCCUGCUGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 17106 0.67 0.474128
Target:  5'- --uGAGGGCCaUCCAGGACcuccuGAUCCUc -3'
miRNA:   3'- cucCUCCCGGcAGGUCCUG-----CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 20592 0.66 0.511276
Target:  5'- cGGGAGGGuuGcCCAucaugcGGACaGACaCCCa -3'
miRNA:   3'- cUCCUCCCggCaGGU------CCUG-CUG-GGGc -5'
27032 3' -63.2 NC_005832.1 + 21078 0.71 0.266658
Target:  5'- gGAGGAGGcuggugauuGCCGgggCCcguaGGGACG-CCCCGg -3'
miRNA:   3'- -CUCCUCC---------CGGCa--GG----UCCUGCuGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 26597 0.7 0.292131
Target:  5'- uGGcGAGGGCCG-CCGGGugGcuGCCCg- -3'
miRNA:   3'- cUC-CUCCCGGCaGGUCCugC--UGGGgc -5'
27032 3' -63.2 NC_005832.1 + 32036 0.68 0.394316
Target:  5'- aGGGAGGgucaGCCGUCCugAGGGagcccaaucccaGACCCCa -3'
miRNA:   3'- cUCCUCC----CGGCAGG--UCCUg-----------CUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 33084 0.68 0.379744
Target:  5'- -cGGGGuGGCCGUCCAGuuccuGAUgGGCCUCGc -3'
miRNA:   3'- cuCCUC-CCGGCAGGUC-----CUG-CUGGGGC- -5'
27032 3' -63.2 NC_005832.1 + 39087 0.85 0.026966
Target:  5'- cAGGAGGGCCGUCCGGGAccccagguucaCGGuCCCCGa -3'
miRNA:   3'- cUCCUCCCGGCAGGUCCU-----------GCU-GGGGC- -5'
27032 3' -63.2 NC_005832.1 + 39520 0.71 0.248755
Target:  5'- cAGGAGGGgUugaucuuaaggGUCCGGGAgGACCCgCGg -3'
miRNA:   3'- cUCCUCCCgG-----------CAGGUCCUgCUGGG-GC- -5'
27032 3' -63.2 NC_005832.1 + 41564 0.68 0.421097
Target:  5'- gGAGGAGGccgccGCCGUCaGGGAgGcGCCCuCGg -3'
miRNA:   3'- -CUCCUCC-----CGGCAGgUCCUgC-UGGG-GC- -5'
27032 3' -63.2 NC_005832.1 + 42503 0.73 0.200962
Target:  5'- uGAGGAGGGCCG-CCAugcucugguGGugGACCguCCu -3'
miRNA:   3'- -CUCCUCCCGGCaGGU---------CCugCUGG--GGc -5'
27032 3' -63.2 NC_005832.1 + 52703 0.66 0.501871
Target:  5'- gGAGuGAGGGCCGUgguGGugGACUUgGg -3'
miRNA:   3'- -CUC-CUCCCGGCAgguCCugCUGGGgC- -5'
27032 3' -63.2 NC_005832.1 + 54372 0.66 0.492541
Target:  5'- cGGGGAGGacaGCaCGguggaCAGGGuCGGCCCCa -3'
miRNA:   3'- -CUCCUCC---CG-GCag---GUCCU-GCUGGGGc -5'
27032 3' -63.2 NC_005832.1 + 54816 0.74 0.17371
Target:  5'- -cGGGGGGaCCGUCCuggaccccguGGACGACCUgGg -3'
miRNA:   3'- cuCCUCCC-GGCAGGu---------CCUGCUGGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.