Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27033 | 3' | -53.2 | NC_005832.1 | + | 12717 | 1.1 | 0.002867 |
Target: 5'- cCAGUGACGGCCCUCAAGCUCAUCAAGg -3' miRNA: 3'- -GUCACUGCCGGGAGUUCGAGUAGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 3935 | 0.79 | 0.274242 |
Target: 5'- uGG-GAUGGCCCUCAAGCUCGUgAu- -3' miRNA: 3'- gUCaCUGCCGGGAGUUCGAGUAgUuc -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 87375 | 0.73 | 0.569419 |
Target: 5'- --uUGACauGGCCCUCAGGCUCucCAGGg -3' miRNA: 3'- gucACUG--CCGGGAGUUCGAGuaGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 79168 | 0.73 | 0.580068 |
Target: 5'- --uUGugGGCCCUguUGAGCUCGUCGGu -3' miRNA: 3'- gucACugCCGGGA--GUUCGAGUAGUUc -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 102883 | 0.72 | 0.622998 |
Target: 5'- -uGUGGCGGCCCUCAucuacaugGGCUa--CAGGa -3' miRNA: 3'- guCACUGCCGGGAGU--------UCGAguaGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 93703 | 0.71 | 0.666046 |
Target: 5'- gGGaGGCGGCCUgaccguaaaCAAGCUCAUCAGc -3' miRNA: 3'- gUCaCUGCCGGGa--------GUUCGAGUAGUUc -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 44308 | 0.71 | 0.708603 |
Target: 5'- --cUGACGGCaaa-AAGCUCGUCAAGg -3' miRNA: 3'- gucACUGCCGggagUUCGAGUAGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 94207 | 0.7 | 0.750008 |
Target: 5'- aCGGUu-CGGgCCUCAAGUaCAUCAGGg -3' miRNA: 3'- -GUCAcuGCCgGGAGUUCGaGUAGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 104099 | 0.69 | 0.779895 |
Target: 5'- ---cGGCGGCCCUCAGGgccaccauCUCcUCGGGa -3' miRNA: 3'- gucaCUGCCGGGAGUUC--------GAGuAGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 50507 | 0.69 | 0.788616 |
Target: 5'- aAGUGgguucagguccccGCGGCCCUUAAGCUagaCAGGu -3' miRNA: 3'- gUCAC-------------UGCCGGGAGUUCGAguaGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 31770 | 0.68 | 0.826636 |
Target: 5'- -uGUGAUGcugccgggguaGUCCUCGAGCUCG-CAAGg -3' miRNA: 3'- guCACUGC-----------CGGGAGUUCGAGUaGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 54053 | 0.68 | 0.826636 |
Target: 5'- aGGUGACguGGCCC-CAGGcCUCcuUCAGGa -3' miRNA: 3'- gUCACUG--CCGGGaGUUC-GAGu-AGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 31855 | 0.68 | 0.844027 |
Target: 5'- gGGUGAUGGCCgUgCAcacuacccAGCUCAUCu-- -3' miRNA: 3'- gUCACUGCCGGgA-GU--------UCGAGUAGuuc -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 48478 | 0.68 | 0.860566 |
Target: 5'- gGGUGACGGgCUUCAGGCcCGgcuuuuacgCGAGa -3' miRNA: 3'- gUCACUGCCgGGAGUUCGaGUa--------GUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 94067 | 0.68 | 0.860566 |
Target: 5'- -cGUGGCGGCCCUgAuguacuugaGGCccgaacCGUCGAGg -3' miRNA: 3'- guCACUGCCGGGAgU---------UCGa-----GUAGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 74334 | 0.68 | 0.871603 |
Target: 5'- ---cGGCGGCUucuaaaccuuaugcgCUCGAGgUCGUCAAGg -3' miRNA: 3'- gucaCUGCCGG---------------GAGUUCgAGUAGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 6734 | 0.67 | 0.879202 |
Target: 5'- gGGUGugGGacucggaacauaccaCCCUCAAGUacgaGUCGAGg -3' miRNA: 3'- gUCACugCC---------------GGGAGUUCGag--UAGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 78409 | 0.67 | 0.883644 |
Target: 5'- cCAGgguaaagGACGGCCUgcgCAaggAGCUCAaCGAGc -3' miRNA: 3'- -GUCa------CUGCCGGGa--GU---UCGAGUaGUUC- -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 95774 | 0.67 | 0.890851 |
Target: 5'- cUAGUGGCGGCuacCCUCGGGCUgGc---- -3' miRNA: 3'- -GUCACUGCCG---GGAGUUCGAgUaguuc -5' |
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27033 | 3' | -53.2 | NC_005832.1 | + | 42376 | 0.67 | 0.890851 |
Target: 5'- cCAGagcaUGGCGGCCCUC---CUCAUgGAGc -3' miRNA: 3'- -GUC----ACUGCCGGGAGuucGAGUAgUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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