miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27033 3' -53.2 NC_005832.1 + 3935 0.79 0.274242
Target:  5'- uGG-GAUGGCCCUCAAGCUCGUgAu- -3'
miRNA:   3'- gUCaCUGCCGGGAGUUCGAGUAgUuc -5'
27033 3' -53.2 NC_005832.1 + 6734 0.67 0.879202
Target:  5'- gGGUGugGGacucggaacauaccaCCCUCAAGUacgaGUCGAGg -3'
miRNA:   3'- gUCACugCC---------------GGGAGUUCGag--UAGUUC- -5'
27033 3' -53.2 NC_005832.1 + 12563 0.66 0.92868
Target:  5'- uGGUGcaGaaGCCCgugucugcCGAGCUCAUCAGGa -3'
miRNA:   3'- gUCAC--UgcCGGGa-------GUUCGAGUAGUUC- -5'
27033 3' -53.2 NC_005832.1 + 12717 1.1 0.002867
Target:  5'- cCAGUGACGGCCCUCAAGCUCAUCAAGg -3'
miRNA:   3'- -GUCACUGCCGGGAGUUCGAGUAGUUC- -5'
27033 3' -53.2 NC_005832.1 + 13164 0.67 0.897805
Target:  5'- gAGcUGGCaGCCgUCuccgagAGGCUCGUCAAGa -3'
miRNA:   3'- gUC-ACUGcCGGgAG------UUCGAGUAGUUC- -5'
27033 3' -53.2 NC_005832.1 + 19374 0.66 0.934063
Target:  5'- --cUGAUGGCCCUCucugcGGCUCcgCu-- -3'
miRNA:   3'- gucACUGCCGGGAGu----UCGAGuaGuuc -5'
27033 3' -53.2 NC_005832.1 + 31770 0.68 0.826636
Target:  5'- -uGUGAUGcugccgggguaGUCCUCGAGCUCG-CAAGg -3'
miRNA:   3'- guCACUGC-----------CGGGAGUUCGAGUaGUUC- -5'
27033 3' -53.2 NC_005832.1 + 31855 0.68 0.844027
Target:  5'- gGGUGAUGGCCgUgCAcacuacccAGCUCAUCu-- -3'
miRNA:   3'- gUCACUGCCGGgA-GU--------UCGAGUAGuuc -5'
27033 3' -53.2 NC_005832.1 + 39051 0.66 0.934063
Target:  5'- uCGGUGACguGGUUCUCGaaaaAGUUUGUCAGGu -3'
miRNA:   3'- -GUCACUG--CCGGGAGU----UCGAGUAGUUC- -5'
27033 3' -53.2 NC_005832.1 + 42376 0.67 0.890851
Target:  5'- cCAGagcaUGGCGGCCCUC---CUCAUgGAGc -3'
miRNA:   3'- -GUC----ACUGCCGGGAGuucGAGUAgUUC- -5'
27033 3' -53.2 NC_005832.1 + 44308 0.71 0.708603
Target:  5'- --cUGACGGCaaa-AAGCUCGUCAAGg -3'
miRNA:   3'- gucACUGCCGggagUUCGAGUAGUUC- -5'
27033 3' -53.2 NC_005832.1 + 48478 0.68 0.860566
Target:  5'- gGGUGACGGgCUUCAGGCcCGgcuuuuacgCGAGa -3'
miRNA:   3'- gUCACUGCCgGGAGUUCGaGUa--------GUUC- -5'
27033 3' -53.2 NC_005832.1 + 50507 0.69 0.788616
Target:  5'- aAGUGgguucagguccccGCGGCCCUUAAGCUagaCAGGu -3'
miRNA:   3'- gUCAC-------------UGCCGGGAGUUCGAguaGUUC- -5'
27033 3' -53.2 NC_005832.1 + 54053 0.68 0.826636
Target:  5'- aGGUGACguGGCCC-CAGGcCUCcuUCAGGa -3'
miRNA:   3'- gUCACUG--CCGGGaGUUC-GAGu-AGUUC- -5'
27033 3' -53.2 NC_005832.1 + 56283 0.67 0.897805
Target:  5'- gGGUaccACGGCCgUCAAGCUC--CAGGa -3'
miRNA:   3'- gUCAc--UGCCGGgAGUUCGAGuaGUUC- -5'
27033 3' -53.2 NC_005832.1 + 74334 0.68 0.871603
Target:  5'- ---cGGCGGCUucuaaaccuuaugcgCUCGAGgUCGUCAAGg -3'
miRNA:   3'- gucaCUGCCGG---------------GAGUUCgAGUAGUUC- -5'
27033 3' -53.2 NC_005832.1 + 75515 0.67 0.897805
Target:  5'- aCAGgGGCcuccacccGGCCCUCAAGCg---CAAGg -3'
miRNA:   3'- -GUCaCUG--------CCGGGAGUUCGaguaGUUC- -5'
27033 3' -53.2 NC_005832.1 + 78409 0.67 0.883644
Target:  5'- cCAGgguaaagGACGGCCUgcgCAaggAGCUCAaCGAGc -3'
miRNA:   3'- -GUCa------CUGCCGGGa--GU---UCGAGUaGUUC- -5'
27033 3' -53.2 NC_005832.1 + 79168 0.73 0.580068
Target:  5'- --uUGugGGCCCUguUGAGCUCGUCGGu -3'
miRNA:   3'- gucACugCCGGGA--GUUCGAGUAGUUc -5'
27033 3' -53.2 NC_005832.1 + 87375 0.73 0.569419
Target:  5'- --uUGACauGGCCCUCAGGCUCucCAGGg -3'
miRNA:   3'- gucACUG--CCGGGAGUUCGAGuaGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.