miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27033 3' -53.2 NC_005832.1 + 56283 0.67 0.897805
Target:  5'- gGGUaccACGGCCgUCAAGCUC--CAGGa -3'
miRNA:   3'- gUCAc--UGCCGGgAGUUCGAGuaGUUC- -5'
27033 3' -53.2 NC_005832.1 + 13164 0.67 0.897805
Target:  5'- gAGcUGGCaGCCgUCuccgagAGGCUCGUCAAGa -3'
miRNA:   3'- gUC-ACUGcCGGgAG------UUCGAGUAGUUC- -5'
27033 3' -53.2 NC_005832.1 + 75515 0.67 0.897805
Target:  5'- aCAGgGGCcuccacccGGCCCUCAAGCg---CAAGg -3'
miRNA:   3'- -GUCaCUG--------CCGGGAGUUCGaguaGUUC- -5'
27033 3' -53.2 NC_005832.1 + 96786 0.66 0.92868
Target:  5'- aGGUGgACGGCCUcaagcagacaugUCGGGCU--UCAAGa -3'
miRNA:   3'- gUCAC-UGCCGGG------------AGUUCGAguAGUUC- -5'
27033 3' -53.2 NC_005832.1 + 12563 0.66 0.92868
Target:  5'- uGGUGcaGaaGCCCgugucugcCGAGCUCAUCAGGa -3'
miRNA:   3'- gUCAC--UgcCGGGa-------GUUCGAGUAGUUC- -5'
27033 3' -53.2 NC_005832.1 + 19374 0.66 0.934063
Target:  5'- --cUGAUGGCCCUCucugcGGCUCcgCu-- -3'
miRNA:   3'- gucACUGCCGGGAGu----UCGAGuaGuuc -5'
27033 3' -53.2 NC_005832.1 + 39051 0.66 0.934063
Target:  5'- uCGGUGACguGGUUCUCGaaaaAGUUUGUCAGGu -3'
miRNA:   3'- -GUCACUG--CCGGGAGU----UCGAGUAGUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.